Variant report

Variant	rs73278268
Chromosome Location	chr12:42385587-42385588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1683193	1.00[AMR][1000 genomes]
rs56669009	1.00[AMR][1000 genomes]
rs56856898	0.85[AMR][1000 genomes]
rs56945323	1.00[AMR][1000 genomes]
rs57582332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58108857	0.85[AMR][1000 genomes]
rs58417163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59451068	1.00[AMR][1000 genomes]
rs59477321	0.85[AMR][1000 genomes]
rs60327465	1.00[AMR][1000 genomes]
rs60655395	1.00[AMR][1000 genomes]
rs712113	1.00[AMR][1000 genomes]
rs712117	1.00[AMR][1000 genomes]
rs7132315	1.00[AMR][1000 genomes]
rs7133783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298660	1.00[AMR][1000 genomes]
rs73278270	0.85[AMR][1000 genomes]
rs73278272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278295	1.00[AMR][1000 genomes]
rs73278297	1.00[AMR][1000 genomes]
rs73278298	1.00[AMR][1000 genomes]
rs73278299	1.00[AMR][1000 genomes]
rs73280016	1.00[AMR][1000 genomes]
rs73280025	1.00[AMR][1000 genomes]
rs73280038	0.85[AMR][1000 genomes]
rs73280040	1.00[AMR][1000 genomes]
rs73280047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280057	0.85[AMR][1000 genomes]
rs73280063	1.00[AMR][1000 genomes]
rs73280071	1.00[AMR][1000 genomes]
rs73280079	1.00[AMR][1000 genomes]
rs73280085	1.00[AMR][1000 genomes]
rs73280087	1.00[AMR][1000 genomes]
rs73280101	1.00[AMR][1000 genomes]
rs7954844	1.00[AMR][1000 genomes]
rs7960285	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs850828	1.00[AMR][1000 genomes]
rs864291	1.00[AMR][1000 genomes]
rs864298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42384600-42385800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:42385400-42385800	Enhancers	A549	lung
3	chr12:42385400-42386200	Enhancers	Brain Germinal Matrix	brain
4	chr12:42385400-42386400	Enhancers	Fetal Intestine Small	intestine
5	chr12:42385400-42386600	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links