Variant report

Variant	rs73280016
Chromosome Location	chr12:42433694-42433695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42419273..42420906-chr12:42433551..42435383,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1234113	1.00[AMR][1000 genomes]
rs1683193	1.00[AMR][1000 genomes]
rs2639125	0.85[AMR][1000 genomes]
rs2639128	1.00[AMR][1000 genomes]
rs56669009	1.00[AMR][1000 genomes]
rs56856898	0.85[AMR][1000 genomes]
rs56945323	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57549495	1.00[AMR][1000 genomes]
rs57582332	1.00[AMR][1000 genomes]
rs58108857	0.85[AMR][1000 genomes]
rs58417163	1.00[AMR][1000 genomes]
rs59451068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59477321	0.85[AMR][1000 genomes]
rs60327465	1.00[AMR][1000 genomes]
rs60655395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712113	1.00[AMR][1000 genomes]
rs712117	1.00[AMR][1000 genomes]
rs712121	1.00[AMR][1000 genomes]
rs712128	1.00[AMR][1000 genomes]
rs7132315	1.00[AMR][1000 genomes]
rs7133783	1.00[AMR][1000 genomes]
rs7298660	1.00[AMR][1000 genomes]
rs73278268	1.00[AMR][1000 genomes]
rs73278270	0.85[AMR][1000 genomes]
rs73278272	1.00[AMR][1000 genomes]
rs73278295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280038	0.85[AMR][1000 genomes]
rs73280040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280047	1.00[AMR][1000 genomes]
rs73280057	0.85[AMR][1000 genomes]
rs73280063	1.00[AMR][1000 genomes]
rs73280071	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280079	1.00[AMR][1000 genomes]
rs73280085	1.00[AMR][1000 genomes]
rs73280087	1.00[AMR][1000 genomes]
rs73280101	1.00[AMR][1000 genomes]
rs73281848	1.00[AMR][1000 genomes]
rs73281857	1.00[AMR][1000 genomes]
rs73281868	1.00[AMR][1000 genomes]
rs73281890	1.00[AMR][1000 genomes]
rs73281897	1.00[AMR][1000 genomes]
rs73283703	0.85[AMR][1000 genomes]
rs7954844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7960285	1.00[AMR][1000 genomes]
rs7964994	1.00[AMR][1000 genomes]
rs850828	1.00[AMR][1000 genomes]
rs864291	1.00[AMR][1000 genomes]
rs864298	1.00[AMR][1000 genomes]
rs9669751	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv685	chr12:42420723-42434827	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42432600-42434000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:42432800-42434000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:42433000-42433800	Enhancers	NH-A	brain
4	chr12:42433400-42434200	Enhancers	Primary B cells from peripheral blood	blood

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