The 2.0 version of rSNPBase

Variant report

Variant rs57549495
Chromosome Location chr12:42611822-42611823
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42550600-42615800 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr12:42552200-42613000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr12:42552400-42620000 Weak transcription Fetal Brain Female brain
4 chr12:42555000-42628600 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr12:42556800-42613200 Weak transcription HMEC breast
6 chr12:42568400-42623400 Weak transcription K562 blood
7 chr12:42568800-42630600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr12:42569600-42630800 Weak transcription Colonic Mucosa Colon
9 chr12:42569800-42631000 Weak transcription Gastric stomach
10 chr12:42574800-42615600 Weak transcription HUVEC blood vessel
11 chr12:42575600-42628600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr12:42586800-42630000 Weak transcription Fetal Kidney kidney
13 chr12:42587200-42629600 Weak transcription Lung lung
14 chr12:42587400-42620000 Weak transcription Fetal Muscle Trunk muscle
15 chr12:42587800-42619400 Weak transcription Fetal Lung lung
16 chr12:42587800-42623400 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr12:42588400-42628600 Weak transcription Thymus Thymus
18 chr12:42591600-42628200 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr12:42593000-42613000 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr12:42593200-42620000 Weak transcription Dnd41 blood
21 chr12:42594000-42615400 Weak transcription Primary T helper naive cells fromperipheralblood blood
22 chr12:42594400-42615400 Weak transcription Primary T cells from cord blood blood
23 chr12:42602400-42628600 Weak transcription Spleen Spleen
24 chr12:42602400-42630800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr12:42602800-42613200 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr12:42602800-42628800 Weak transcription HepG2 liver
27 chr12:42603000-42620200 Weak transcription Primary B cells from cord blood blood
28 chr12:42603600-42625800 Weak transcription GM12878-XiMat blood
29 chr12:42604400-42618800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr12:42604400-42619400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr12:42604400-42620000 Weak transcription Liver Liver
32 chr12:42604400-42623400 Weak transcription Primary B cells from peripheral blood blood
33 chr12:42604400-42627400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr12:42604400-42628000 Weak transcription Placenta Placenta
35 chr12:42604600-42615400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr12:42604600-42620000 Weak transcription Brain Germinal Matrix brain
37 chr12:42604600-42624400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
38 chr12:42604600-42626800 Weak transcription Hela-S3 cervix
39 chr12:42604600-42628800 Weak transcription Primary T cells fromperipheralblood blood
40 chr12:42604600-42629000 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr12:42605000-42615400 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr12:42607200-42620000 Weak transcription Fetal Thymus thymus
43 chr12:42607800-42630600 Weak transcription NHEK skin
44 chr12:42608000-42614400 Weak transcription Brain Cingulate Gyrus brain
45 chr12:42608000-42627400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr12:42608200-42612800 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr12:42608200-42614000 Weak transcription Stomach Mucosa stomach
48 chr12:42608200-42615600 Weak transcription Fetal Intestine Large intestine
49 chr12:42608200-42619400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr12:42608200-42620200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015