Variant report

Variant	rs73283728
Chromosome Location	chr12:42648954-42648955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42630657..42633429-chr12:42647467..42649412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015153	Chromatin interaction
ENSG00000134283	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11385212	1.00[AMR][1000 genomes]
rs1234113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1683193	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2639125	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2639128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56669009	1.00[AMR][1000 genomes]
rs56945323	1.00[AMR][1000 genomes]
rs57164741	0.85[AFR][1000 genomes]
rs57166587	0.83[AMR][1000 genomes]
rs57260154	0.83[AMR][1000 genomes]
rs57549495	1.00[AMR][1000 genomes]
rs57582332	1.00[AMR][1000 genomes]
rs58108857	0.85[AMR][1000 genomes]
rs58488818	0.83[AMR][1000 genomes]
rs58902406	0.83[AMR][1000 genomes]
rs59321446	0.83[AMR][1000 genomes]
rs60327465	1.00[AMR][1000 genomes]
rs60341977	0.83[AMR][1000 genomes]
rs712113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712117	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712121	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs712128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7132315	1.00[AMR][1000 genomes]
rs7136339	0.83[AMR][1000 genomes]
rs7298660	1.00[AMR][1000 genomes]
rs7303532	0.83[AMR][1000 genomes]
rs73272006	0.83[AMR][1000 genomes]
rs73272039	0.83[AMR][1000 genomes]
rs73272041	0.83[AMR][1000 genomes]
rs73272052	0.83[AMR][1000 genomes]
rs73272054	0.83[AMR][1000 genomes]
rs73272065	0.83[AMR][1000 genomes]
rs73273905	0.83[AMR][1000 genomes]
rs73273908	0.83[AMR][1000 genomes]
rs73273915	0.83[AMR][1000 genomes]
rs73273940	0.83[AMR][1000 genomes]
rs73273948	0.83[AMR][1000 genomes]
rs73280038	0.85[AMR][1000 genomes]
rs73280040	1.00[AMR][1000 genomes]
rs73280047	1.00[AMR][1000 genomes]
rs73280057	0.85[AMR][1000 genomes]
rs73280063	1.00[AMR][1000 genomes]
rs73280071	1.00[AMR][1000 genomes]
rs73280079	1.00[AMR][1000 genomes]
rs73280085	1.00[AMR][1000 genomes]
rs73280087	1.00[AMR][1000 genomes]
rs73280101	1.00[AMR][1000 genomes]
rs73281848	1.00[AMR][1000 genomes]
rs73281857	1.00[AMR][1000 genomes]
rs73281868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281890	1.00[AMR][1000 genomes]
rs73281897	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283703	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73283726	1.00[AMR][1000 genomes]
rs73283731	1.00[AMR][1000 genomes]
rs73283737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283757	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283764	1.00[AMR][1000 genomes]
rs73283782	0.83[AMR][1000 genomes]
rs73285606	0.83[AMR][1000 genomes]
rs73285607	0.83[AMR][1000 genomes]
rs73285610	0.83[AMR][1000 genomes]
rs73285625	0.83[AMR][1000 genomes]
rs73285647	0.83[AMR][1000 genomes]
rs73285664	0.83[AMR][1000 genomes]
rs73285666	0.83[AMR][1000 genomes]
rs73285678	0.83[AMR][1000 genomes]
rs74078990	0.83[AMR][1000 genomes]
rs7957401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7960285	1.00[AMR][1000 genomes]
rs7964994	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs850828	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864291	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864298	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9669751	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv826351	chr12:42584218-42676281	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv826352	chr12:42593124-42675255	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3397788	chr12:42636734-42665519	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42648800-42650200	Enhancers	Hela-S3	cervix

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