The 2.0 version of rSNPBase

Variant report

Variant rs73280087
Chromosome Location chr12:42524162-42524163
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42471800-42524400 Weak transcription Esophagus oesophagus
2 chr12:42476000-42524400 Weak transcription Gastric stomach
3 chr12:42476200-42524400 Weak transcription Pancreas Pancrea
4 chr12:42484400-42524800 Weak transcription Right Ventricle heart
5 chr12:42493000-42524400 Weak transcription Brain Substantia Nigra brain
6 chr12:42493000-42534400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr12:42505800-42537000 Weak transcription Fetal Stomach stomach
8 chr12:42505800-42537000 Weak transcription Lung lung
9 chr12:42508400-42524600 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr12:42512000-42537400 Weak transcription Ovary ovary
11 chr12:42512400-42537000 Weak transcription Placenta Placenta
12 chr12:42512600-42524400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr12:42512600-42524600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr12:42512800-42524400 Weak transcription Left Ventricle heart
15 chr12:42513000-42537000 Weak transcription Primary T cells fromperipheralblood blood
16 chr12:42513200-42537200 Weak transcription Primary T cells from cord blood blood
17 chr12:42519000-42524800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr12:42519000-42537000 Weak transcription Right Atrium heart
19 chr12:42519200-42524200 Weak transcription Fetal Kidney kidney
20 chr12:42519200-42524400 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr12:42519200-42524600 Enhancers A549 lung
22 chr12:42519200-42524600 Weak transcription Monocytes-CD14+_RO01746 blood
23 chr12:42519200-42529000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr12:42519200-42537400 Weak transcription Small Intestine intestine
25 chr12:42519400-42524600 Weak transcription Primary monocytes fromperipheralblood blood
26 chr12:42519400-42524600 Weak transcription Adipose Nuclei Adipose
27 chr12:42519600-42524400 Weak transcription Psoas Muscle Psoas
28 chr12:42519600-42524600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr12:42519600-42526600 Weak transcription HepG2 liver
30 chr12:42519600-42528400 Weak transcription Duodenum Mucosa Duodenum
31 chr12:42519600-42537200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr12:42519800-42524200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr12:42519800-42524600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr12:42519800-42529000 Weak transcription GM12878-XiMat blood
35 chr12:42519800-42536800 Weak transcription Primary hematopoietic stem cells blood
36 chr12:42519800-42537000 Weak transcription Primary B cells from cord blood blood
37 chr12:42520000-42524400 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr12:42520200-42524200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr12:42521600-42524200 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr12:42522600-42537000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr12:42522800-42524400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr12:42522800-42528400 Weak transcription Fetal Intestine Small intestine
43 chr12:42523000-42524600 Weak transcription Stomach Mucosa stomach
44 chr12:42523200-42524200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr12:42523600-42524200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr12:42523600-42524400 Enhancers Muscle Satellite Cultured Cells --
47 chr12:42523600-42525600 Enhancers HUVEC blood vessel
48 chr12:42523600-42525800 Enhancers Liver Liver
49 chr12:42523800-42524200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr12:42523800-42524200 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015