Variant report

Variant	rs73280481
Chromosome Location	chr14:68359284-68359285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68356714..68362753-chr14:69260089..69264133,5	MCF-7	breast:
2	chr14:68350691..68354590-chr14:68355924..68359840,3	MCF-7	breast:
3	chr14:68359134..68361352-chr14:68406025..68408962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs34805563	1.00[AMR][1000 genomes]
rs35080917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35106153	1.00[AMR][1000 genomes]
rs35575056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35577122	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35917338	1.00[AMR][1000 genomes]
rs57048278	1.00[AMR][1000 genomes]
rs58431859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58724136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59429458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60273960	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011477	1.00[AMR][1000 genomes]
rs61214213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61341378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61584136	1.00[AMR][1000 genomes]
rs73276671	1.00[AMR][1000 genomes]
rs73276676	1.00[AMR][1000 genomes]
rs73276687	1.00[AMR][1000 genomes]
rs73278432	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278469	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280405	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280424	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280429	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280438	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280465	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282413	1.00[AMR][1000 genomes]
rs73282473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518669	chr14:68354542-68362510	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68348200-68363800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:68350000-68359600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:68351200-68363600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:68351400-68361000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:68351400-68367600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:68351400-68367800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:68351600-68367400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:68352000-68367600	Weak transcription	Primary T cells from cord blood	blood
11	chr14:68352800-68359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:68354800-68359400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:68358000-68360200	Enhancers	Fetal Intestine Large	intestine
14	chr14:68358000-68361200	Enhancers	Fetal Intestine Small	intestine
15	chr14:68359000-68359600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:68359000-68359600	Enhancers	Duodenum Mucosa	Duodenum
17	chr14:68359000-68359800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:68359000-68359800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr14:68359000-68359800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:68359200-68359600	Enhancers	Fetal Muscle Leg	muscle
21	chr14:68359200-68359600	Enhancers	Pancreas	Pancrea
22	chr14:68359200-68359600	Enhancers	NHDF-Ad	bronchial
23	chr14:68359200-68359800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:68359200-68360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:68359200-68361800	Enhancers	Ovary	ovary

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