Variant report

Variant	rs73282473
Chromosome Location	chr14:68427466-68427467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
2	chr14:68425055..68428932-chr14:69256531..69260317,3	MCF-7	breast:
3	chr14:68416521..68418894-chr14:68426860..68428959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs34805563	1.00[AMR][1000 genomes]
rs35050678	0.90[AFR][1000 genomes]
rs35080917	1.00[AMR][1000 genomes]
rs35106153	1.00[AMR][1000 genomes]
rs35575056	1.00[AMR][1000 genomes]
rs35577122	1.00[AMR][1000 genomes]
rs35917338	1.00[AMR][1000 genomes]
rs56801190	0.90[AFR][1000 genomes]
rs56933151	0.90[AFR][1000 genomes]
rs57048278	1.00[AMR][1000 genomes]
rs57745459	0.90[AFR][1000 genomes]
rs57826383	0.90[AFR][1000 genomes]
rs58407913	0.90[AFR][1000 genomes]
rs58431859	1.00[AMR][1000 genomes]
rs58724136	1.00[AMR][1000 genomes]
rs59429458	1.00[AMR][1000 genomes]
rs60271256	0.90[AFR][1000 genomes]
rs60273960	1.00[AMR][1000 genomes]
rs60491097	1.00[AFR][1000 genomes]
rs61011477	1.00[AMR][1000 genomes]
rs61169935	0.90[AFR][1000 genomes]
rs61214213	1.00[AMR][1000 genomes]
rs61341378	1.00[AMR][1000 genomes]
rs61512918	0.90[AFR][1000 genomes]
rs61584136	1.00[AMR][1000 genomes]
rs73276676	1.00[AMR][1000 genomes]
rs73276687	1.00[AMR][1000 genomes]
rs73278432	1.00[AMR][1000 genomes]
rs73278469	1.00[AMR][1000 genomes]
rs73280405	1.00[AMR][1000 genomes]
rs73280424	1.00[AMR][1000 genomes]
rs73280429	1.00[AMR][1000 genomes]
rs73280438	1.00[AMR][1000 genomes]
rs73280465	1.00[AMR][1000 genomes]
rs73280477	1.00[AMR][1000 genomes]
rs73280481	1.00[AMR][1000 genomes]
rs73280491	1.00[AMR][1000 genomes]
rs73282413	1.00[AMR][1000 genomes]
rs73282490	1.00[AFR][1000 genomes]
rs73282491	0.84[AFR][1000 genomes]
rs73284247	1.00[AFR][1000 genomes]
rs73284265	1.00[AFR][1000 genomes]
rs73284273	1.00[AFR][1000 genomes]
rs73284295	1.00[AFR][1000 genomes]
rs73286262	0.90[AFR][1000 genomes]
rs73286263	0.90[AFR][1000 genomes]
rs73286279	0.90[AFR][1000 genomes]
rs73286288	0.90[AFR][1000 genomes]
rs73288023	0.90[AFR][1000 genomes]
rs73288047	0.90[AFR][1000 genomes]
rs73288065	0.86[AFR][1000 genomes]
rs73288068	0.90[AFR][1000 genomes]
rs73288074	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
6	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68425200-68428600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68425400-68427800	Weak transcription	Fetal Stomach	stomach
10	chr14:68425400-68428800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:68427000-68427600	Weak transcription	Fetal Lung	lung
12	chr14:68427200-68427600	Weak transcription	Stomach Mucosa	stomach
13	chr14:68427400-68427600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr14:68427400-68428000	Enhancers	Ovary	ovary
15	chr14:68427400-68429600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:68427400-68430200	Enhancers	Duodenum Mucosa	Duodenum
17	chr14:68427400-68433600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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