Variant report

Variant	rs60271256
Chromosome Location	chr14:68634656-68634657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68632587..68634751-chr14:68693456..68696161,2	MCF-7	breast:
2	chr14:68634548..68636217-chr14:68642165..68644435,2	MCF-7	breast:
3	chr14:68630532..68635204-chr14:68697159..68701180,5	MCF-7	breast:
4	chr14:68405643..68407485-chr14:68633340..68635771,2	MCF-7	breast:
5	chr14:68628721..68630702-chr14:68634152..68636698,2	MCF-7	breast:
6	chr14:68631809..68634739-chr14:68711873..68715827,4	MCF-7	breast:
7	chr14:68631283..68635497-chr14:68656962..68661024,3	MCF-7	breast:
8	chr14:68629386..68636406-chr14:68656636..68661805,14	MCF-7	breast:
9	chr14:68630773..68635731-chr14:69256780..69262810,10	MCF-7	breast:
10	chr14:68429774..68432676-chr14:68633532..68635323,2	MCF-7	breast:
11	chr14:68633516..68636116-chr14:68713007..68714934,3	MCF-7	breast:
12	chr14:68632963..68636624-chr14:69255209..69259265,3	MCF-7	breast:
13	chr14:68603253..68606404-chr14:68630681..68636382,6	MCF-7	breast:
14	chr14:68435349..68437064-chr14:68633160..68635792,2	MCF-7	breast:
15	chr14:68630159..68635177-chr14:68676158..68679265,4	MCF-7	breast:
16	chr14:68633202..68635028-chr14:68637534..68639767,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs58407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68625000-68635600	Weak transcription	HSMM	muscle
2	chr14:68625200-68635000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68625200-68636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68629600-68642200	Enhancers	Fetal Intestine Large	intestine
5	chr14:68629600-68642400	Enhancers	Fetal Intestine Small	intestine
6	chr14:68630400-68636400	Weak transcription	Small Intestine	intestine
7	chr14:68630600-68642400	Enhancers	Stomach Mucosa	stomach
8	chr14:68631400-68635200	Weak transcription	Psoas Muscle	Psoas
9	chr14:68631600-68634800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr14:68631800-68635600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:68631800-68637000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:68632000-68635800	Enhancers	Primary hematopoietic stem cells	blood
13	chr14:68632200-68635000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:68632200-68635200	Weak transcription	Aorta	Aorta
15	chr14:68632200-68635600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:68632400-68635000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:68632400-68635000	Weak transcription	Fetal Kidney	kidney
18	chr14:68632400-68635200	Weak transcription	Fetal Stomach	stomach
19	chr14:68632400-68635400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:68632400-68636400	Weak transcription	HepG2	liver
21	chr14:68632400-68641200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr14:68632800-68635600	Weak transcription	Ovary	ovary
23	chr14:68632800-68637600	Enhancers	A549	lung
24	chr14:68632800-68639400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:68633800-68635600	Weak transcription	Liver	Liver
26	chr14:68634000-68636200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:68634000-68637800	Enhancers	Colon Smooth Muscle	Colon
28	chr14:68634200-68635000	Enhancers	Duodenum Mucosa	Duodenum
29	chr14:68634400-68638200	Enhancers	Rectal Smooth Muscle	rectum
30	chr14:68634400-68640200	Weak transcription	Colonic Mucosa	Colon
31	chr14:68634600-68635800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr14:68634600-68637000	Enhancers	Fetal Lung	lung

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