Variant report

Variant	rs58407913
Chromosome Location	chr14:68652564-68652565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68651948..68653688-chr14:68676457..68678591,2	MCF-7	breast:
2	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
3	chr14:68651292..68653476-chr14:69259431..69262881,3	MCF-7	breast:
4	chr14:68405780..68407740-chr14:68651563..68653556,2	MCF-7	breast:
5	chr14:68637477..68641965-chr14:68646902..68653784,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35538152	1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs60271256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
3	chr14:68645000-68655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68646600-68655200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68648600-68659600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:68649000-68659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:68649200-68652600	Weak transcription	HSMMtube	muscle
9	chr14:68649400-68652800	Weak transcription	NH-A	brain
10	chr14:68649400-68655000	Weak transcription	Fetal Intestine Large	intestine
11	chr14:68649400-68658000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:68649600-68652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:68649600-68652800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:68649600-68657200	Weak transcription	Fetal Lung	lung
16	chr14:68649800-68652600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:68649800-68660400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:68650000-68660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:68650200-68652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:68651400-68652600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:68651600-68652600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:68652000-68652800	Weak transcription	A549	lung
24	chr14:68652400-68654000	Enhancers	NHDF-Ad	bronchial

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