Variant report

Variant	rs74058874
Chromosome Location	chr14:68764053-68764054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68762972..68765914-chr14:69258149..69260170,3	MCF-7	breast:
2	chr14:68763338..68764227-chr17:59489430..59490294,2	MCF-7	breast:
3	chr14:68550358..68553138-chr14:68762603..68764718,2	MCF-7	breast:
4	chr14:68762626..68765415-chr14:69260275..69262660,2	MCF-7	breast:
5	chr14:68763749..68766581-chr14:68985695..68988216,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AMR][1000 genomes]
rs35538152	1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AMR][1000 genomes]
rs56933151	1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AMR][1000 genomes]
rs57826383	1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs58407913	1.00[AMR][1000 genomes]
rs60271256	1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AMR][1000 genomes]
rs61290854	1.00[AMR][1000 genomes]
rs61512918	1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73278399	1.00[AMR][1000 genomes]
rs73278401	1.00[AMR][1000 genomes]
rs73280314	1.00[AMR][1000 genomes]
rs73282338	1.00[AMR][1000 genomes]
rs73284295	1.00[AMR][1000 genomes]
rs73286262	1.00[AMR][1000 genomes]
rs73286263	1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AMR][1000 genomes]
rs73286288	1.00[AMR][1000 genomes]
rs73288023	1.00[AMR][1000 genomes]
rs73288038	1.00[AMR][1000 genomes]
rs73288047	1.00[AMR][1000 genomes]
rs73288065	1.00[AMR][1000 genomes]
rs73288068	1.00[AMR][1000 genomes]
rs73288074	1.00[AMR][1000 genomes]
rs8022646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
4	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:68753600-68768800	Weak transcription	Dnd41	blood
7	chr14:68756600-68765200	Enhancers	Fetal Intestine Small	intestine
8	chr14:68757800-68765200	Enhancers	Fetal Intestine Large	intestine
9	chr14:68758200-68765600	Enhancers	Primary T cells from cord blood	blood
10	chr14:68758400-68765600	Enhancers	Fetal Kidney	kidney
11	chr14:68758400-68765600	Enhancers	Fetal Muscle Leg	muscle
12	chr14:68758600-68765200	Enhancers	Fetal Lung	lung
13	chr14:68759000-68768400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:68760000-68768800	Weak transcription	Thymus	Thymus
15	chr14:68760400-68768800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:68760400-68776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:68760600-68764800	Weak transcription	HUVEC	blood vessel
18	chr14:68760600-68765000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:68760600-68768400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:68760600-68768600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68760600-68773600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:68761000-68765200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:68761000-68767600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68761200-68765200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr14:68761400-68765200	Enhancers	Ovary	ovary
26	chr14:68761600-68765600	Enhancers	Fetal Stomach	stomach
27	chr14:68762000-68773400	Weak transcription	Small Intestine	intestine
28	chr14:68762200-68764200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:68762200-68764600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:68762400-68764600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:68762400-68764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:68762400-68764800	Weak transcription	Stomach Mucosa	stomach
33	chr14:68762400-68767400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:68762600-68764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:68762600-68764400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:68762600-68764600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:68762600-68764600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr14:68762600-68764800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:68762800-68764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr14:68762800-68764400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:68762800-68764600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:68762800-68765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:68762800-68765600	Enhancers	HepG2	liver
44	chr14:68762800-68767000	Weak transcription	Left Ventricle	heart
45	chr14:68762800-68768800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:68762800-68771400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:68763000-68764400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr14:68763000-68764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr14:68763000-68768800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:68763200-68764200	Enhancers	Adipose Nuclei	Adipose

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