Variant report

Variant	rs57826383
Chromosome Location	chr14:68571078-68571079
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68559348..68562208-chr14:68567307..68571159,3	MCF-7	breast:
3	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
4	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
5	chr14:68569512..68572428-chr14:68574318..68576460,3	MCF-7	breast:
6	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60271256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68568800-68571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68569000-68571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
5	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
11	chr14:68570000-68572400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68570200-68572800	Enhancers	Fetal Heart	heart
13	chr14:68570400-68571600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:68570400-68572000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:68570400-68572000	Enhancers	NH-A	brain
16	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:68570600-68571400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr14:68570600-68571600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:68570600-68571600	Enhancers	Fetal Kidney	kidney
20	chr14:68570600-68571800	Enhancers	Osteobl	bone
21	chr14:68570600-68572000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:68570600-68572000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:68570600-68572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68570600-68572000	Enhancers	HSMMtube	muscle
25	chr14:68570600-68572000	Enhancers	NHLF	lung
26	chr14:68570600-68573400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr14:68570600-68573800	Enhancers	NHEK	skin
29	chr14:68570800-68571200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:68570800-68572200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:68570800-68572600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:68571000-68571600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr14:68571000-68571600	Enhancers	Fetal Intestine Small	intestine
35	chr14:68571000-68571800	Enhancers	NHDF-Ad	bronchial
36	chr14:68571000-68572200	Enhancers	HMEC	breast
37	chr14:68571000-68574000	Enhancers	Fetal Lung	lung

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