Variant report

Variant	rs60491097
Chromosome Location	chr14:68527156-68527157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68526034..68528423-chr14:69258225..69260701,2	MCF-7	breast:
2	chr14:68519855..68522252-chr14:68526283..68527836,2	MCF-7	breast:
3	chr14:68524998..68527629-chr14:68533348..68536338,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56801190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58407913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60271256	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	1.00[AMR][1000 genomes]
rs61512918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282473	1.00[AFR][1000 genomes]
rs73282490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	1.00[AMR][1000 genomes]
rs73288047	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68526600-68527200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68526600-68527200	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:68526800-68527600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr14:68526800-68527800	Enhancers	Colon Smooth Muscle	Colon
5	chr14:68526800-68527800	Enhancers	Fetal Lung	lung
6	chr14:68527000-68527200	Enhancers	Ovary	ovary

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