Variant report

Variant	rs73288074
Chromosome Location	chr14:68644745-68644746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68644130..68645077-chr14:69036391..69037451,11	MCF-7	breast:
2	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
3	chr14:68407559..68409151-chr14:68644615..68646770,2	MCF-7	breast:
4	chr14:68644184..68646511-chr14:68924637..68927356,2	MCF-7	breast:
5	chr14:68644251..68644931-chr14:68925498..68926128,4	MCF-7	breast:
6	chr14:68606603..68609632-chr14:68643322..68645400,3	MCF-7	breast:
7	chr14:68644189..68644931-chr14:68925503..68926128,3	MCF-7	breast:
8	chr14:68644130..68645028-chr14:69036481..69037146,7	MCF-7	breast:
9	chr14:68641980..68649731-chr14:69257226..69262968,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs58407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60271256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60324261	1.00[ASN][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68635400-68648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:68636200-68648000	Weak transcription	HSMM	muscle
3	chr14:68638600-68645600	Enhancers	Rectal Smooth Muscle	rectum
4	chr14:68638800-68645800	Enhancers	Colon Smooth Muscle	Colon
5	chr14:68640400-68645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:68640400-68647600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:68640400-68648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:68640600-68648200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:68641000-68648200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:68641000-68648200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr14:68641200-68647600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:68641400-68647400	Weak transcription	HepG2	liver
13	chr14:68641400-68648400	Weak transcription	Liver	Liver
14	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:68641600-68645000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:68642200-68647400	Weak transcription	Fetal Intestine Large	intestine
17	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
18	chr14:68643000-68645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:68643400-68646000	Enhancers	A549	lung
20	chr14:68643600-68645200	Enhancers	Stomach Smooth Muscle	stomach
21	chr14:68643600-68646000	Enhancers	Fetal Heart	heart
22	chr14:68643800-68645600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:68643800-68645800	Enhancers	Fetal Lung	lung
24	chr14:68644000-68644800	Enhancers	Esophagus	oesophagus
25	chr14:68644000-68644800	Enhancers	Psoas Muscle	Psoas
26	chr14:68644200-68644800	Enhancers	Fetal Intestine Small	intestine
27	chr14:68644200-68644800	Enhancers	Small Intestine	intestine
28	chr14:68644200-68645400	Enhancers	Fetal Stomach	stomach
29	chr14:68644400-68644800	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:68644400-68644800	Enhancers	Ovary	ovary
31	chr14:68644400-68645000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:68644400-68646000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:68644400-68646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:68644600-68644800	Enhancers	Fetal Muscle Leg	muscle
35	chr14:68644600-68645000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:68644600-68645000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:68644600-68645000	Enhancers	Fetal Thymus	thymus
38	chr14:68644600-68645600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr14:68644600-68645600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr14:68644600-68645600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:68644600-68645600	Enhancers	NHEK	skin
42	chr14:68644600-68645800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:68644600-68646000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:68644600-68646000	Enhancers	Fetal Kidney	kidney
45	chr14:68644600-68646000	Enhancers	Stomach Mucosa	stomach
46	chr14:68644600-68646000	Enhancers	Osteobl	bone
47	chr14:68644600-68646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr14:68644600-68646200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:68644600-68646200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr14:68644600-68646600	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links