Variant report

Variant	rs57955495
Chromosome Location	chr14:68820410-68820411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs35050678	1.00[AMR][1000 genomes]
rs35538152	1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AMR][1000 genomes]
rs58407913	1.00[AMR][1000 genomes]
rs60271256	1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AMR][1000 genomes]
rs61290854	1.00[AMR][1000 genomes]
rs61512918	1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278399	1.00[AMR][1000 genomes]
rs73278401	1.00[AMR][1000 genomes]
rs73280314	1.00[AMR][1000 genomes]
rs73282338	1.00[AMR][1000 genomes]
rs73288023	1.00[AMR][1000 genomes]
rs73288038	1.00[AMR][1000 genomes]
rs73288047	1.00[AMR][1000 genomes]
rs73288065	1.00[AMR][1000 genomes]
rs73288068	1.00[AMR][1000 genomes]
rs73288074	1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]
rs8022646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
5	chr14:68816600-68825600	Weak transcription	Fetal Thymus	thymus
6	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:68816800-68825000	Weak transcription	Aorta	Aorta
8	chr14:68817400-68824400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:68817400-68825000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:68818400-68824400	Weak transcription	Fetal Kidney	kidney
12	chr14:68818600-68825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:68820400-68824800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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