Variant report

Variant	rs73282338
Chromosome Location	chr14:68970040-68970041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
2	chr14:68968310..68970702-chr14:68984207..68986493,2	MCF-7	breast:
3	chr14:68968741..68971130-chr14:68972103..68973954,3	K562	blood:
4	chr14:68969318..68971614-chr20:45988834..45991087,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35538152	1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73278399	1.00[AMR][1000 genomes]
rs73278401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]
rs8022646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68956800-68971800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68960400-68971000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:68960400-68971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:68960400-68971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:68960400-68971800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:68962000-68972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:68962200-68971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:68962800-68972600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:68963200-68972600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:68965000-68971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:68965400-68974400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
13	chr14:68965800-68973200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:68966000-68970400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:68967400-68973200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:68967400-68973600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
18	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
19	chr14:68967600-68970200	Enhancers	Fetal Muscle Trunk	muscle
20	chr14:68967600-68972800	Enhancers	Primary T cells from cord blood	blood
21	chr14:68967600-68973000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:68967600-68973200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr14:68967600-68973800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:68967600-68974200	Enhancers	Placenta	Placenta
25	chr14:68967800-68974400	Enhancers	Fetal Stomach	stomach
26	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
27	chr14:68968200-68971400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:68968200-68973200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:68968200-68973600	Enhancers	Placenta Amnion	Placenta Amnion
30	chr14:68968400-68970200	Enhancers	Fetal Kidney	kidney
31	chr14:68968600-68971000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:68968600-68972600	Weak transcription	Psoas Muscle	Psoas
33	chr14:68968600-68972800	Weak transcription	Brain Substantia Nigra	brain
34	chr14:68968600-68972800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:68968600-68973000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:68968600-68974400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:68968800-68971200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:68968800-68971200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:68968800-68972000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:68968800-68972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:68968800-68972600	Weak transcription	Adipose Nuclei	Adipose
42	chr14:68968800-68972600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:68968800-68972600	Weak transcription	HMEC	breast
44	chr14:68968800-68972600	Weak transcription	NHEK	skin
45	chr14:68968800-68972800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:68968800-68972800	Weak transcription	Small Intestine	intestine
47	chr14:68968800-68973000	Weak transcription	Right Atrium	heart
48	chr14:68968800-68973000	Weak transcription	Right Ventricle	heart
49	chr14:68969000-68971800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:68969000-68971800	Weak transcription	Pancreas	Pancrea

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