Variant report

Variant	rs73274116
Chromosome Location	chr14:68803737-68803738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68802480..68804741-chr14:68806549..68808439,2	MCF-7	breast:
2	chr14:68735494..68738369-chr14:68803513..68805085,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AMR][1000 genomes]
rs35538152	1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AMR][1000 genomes]
rs56933151	1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs58407913	1.00[AMR][1000 genomes]
rs60271256	1.00[AMR][1000 genomes]
rs61166822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169935	1.00[AMR][1000 genomes]
rs61290854	1.00[AMR][1000 genomes]
rs61512918	1.00[AMR][1000 genomes]
rs73274125	1.00[AFR][1000 genomes]
rs73274136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73278399	1.00[AMR][1000 genomes]
rs73278401	1.00[AMR][1000 genomes]
rs73280314	1.00[AMR][1000 genomes]
rs73282338	1.00[AMR][1000 genomes]
rs73286262	1.00[AMR][1000 genomes]
rs73286263	1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AMR][1000 genomes]
rs73286288	1.00[AMR][1000 genomes]
rs73288023	1.00[AMR][1000 genomes]
rs73288038	1.00[AMR][1000 genomes]
rs73288047	1.00[AMR][1000 genomes]
rs73288065	1.00[AMR][1000 genomes]
rs73288068	1.00[AMR][1000 genomes]
rs73288074	1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]
rs8022646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68799400-68804000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:68799400-68806400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:68799600-68804000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:68799600-68806400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:68799800-68808000	Weak transcription	Fetal Lung	lung
10	chr14:68800000-68803800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:68800000-68804200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:68800000-68807400	Weak transcription	Fetal Stomach	stomach
13	chr14:68800000-68808200	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:68800000-68808400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:68800200-68804000	Enhancers	GM12878-XiMat	blood
16	chr14:68802400-68803800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:68802800-68803800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:68803200-68805200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr14:68803400-68804000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:68803400-68804000	Enhancers	Colon Smooth Muscle	Colon
21	chr14:68803400-68804200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:68803400-68804400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr14:68803400-68804600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:68803400-68805000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr14:68803400-68805000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:68803400-68807000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:68803600-68804400	Enhancers	Primary T cells from cord blood	blood
28	chr14:68803600-68804400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr14:68803600-68804600	Enhancers	Monocytes-CD14+_RO01746	blood

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