Variant report

Variant	rs73286279
Chromosome Location	chr14:68592669-68592670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
2	chr14:68589896..68592803-chr14:68593346..68594883,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60271256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
4	chr14:68588600-68593000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:68590600-68593400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:68591000-68593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:68591000-68593400	Enhancers	Fetal Kidney	kidney
8	chr14:68591200-68592800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:68591200-68595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68591600-68592800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:68591600-68592800	Enhancers	Fetal Intestine Large	intestine
12	chr14:68591600-68593000	Enhancers	NH-A	brain
13	chr14:68591600-68593200	Enhancers	HSMM	muscle
14	chr14:68591600-68593200	Enhancers	NHEK	skin
15	chr14:68591600-68594200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:68591800-68592800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:68591800-68593200	Enhancers	Fetal Heart	heart
18	chr14:68591800-68593200	Enhancers	HSMMtube	muscle
19	chr14:68591800-68593400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:68591800-68593400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:68591800-68593400	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr14:68591800-68593400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:68591800-68594200	Enhancers	Fetal Stomach	stomach
24	chr14:68591800-68594600	Enhancers	Fetal Lung	lung
25	chr14:68592000-68592800	Enhancers	Fetal Brain Male	brain
26	chr14:68592000-68593600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr14:68592000-68593600	Enhancers	Rectal Smooth Muscle	rectum
28	chr14:68592000-68594600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:68592000-68594800	Enhancers	Fetal Intestine Small	intestine
30	chr14:68592200-68592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:68592200-68593200	Enhancers	NHDF-Ad	bronchial
32	chr14:68592200-68593400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr14:68592200-68594200	Enhancers	Colon Smooth Muscle	Colon
34	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:68592400-68593000	Weak transcription	Adipose Nuclei	Adipose
36	chr14:68592400-68593000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:68592400-68593200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr14:68592400-68593200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr14:68592400-68597400	Weak transcription	Aorta	Aorta
40	chr14:68592400-68598600	Weak transcription	Fetal Muscle Leg	muscle
41	chr14:68592400-68598800	Weak transcription	Ovary	ovary
42	chr14:68592400-68602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
44	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:68592600-68593000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:68592600-68593000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:68592600-68593000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:68592600-68594200	Enhancers	A549	lung

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