Variant report

Variant	rs73288023
Chromosome Location	chr14:68609296-68609297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
2	chr14:68607251..68609680-chr14:69249832..69252803,2	MCF-7	breast:
3	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
4	chr14:68606603..68609632-chr14:68643322..68645400,3	MCF-7	breast:
5	chr14:68608519..68611286-chr14:68675156..68679124,3	MCF-7	breast:
6	chr14:68607701..68609708-chr14:69282854..69284739,2	MCF-7	breast:
7	chr14:68604583..68613347-chr14:69257128..69263457,24	MCF-7	breast:
8	chr14:68605985..68611095-chr14:68698031..68701146,7	MCF-7	breast:
9	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
10	chr14:68601301..68602871-chr14:68607372..68610107,2	MCF-7	breast:
11	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
12	chr14:68604998..68610062-chr14:68640494..68644617,7	MCF-7	breast:
13	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
14	chr14:68605640..68609689-chr14:68681508..68683618,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs34144798	1.00[AMR][1000 genomes]
rs34777538	1.00[AMR][1000 genomes]
rs35050678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902572	1.00[AMR][1000 genomes]
rs56801190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56933151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556822	1.00[AMR][1000 genomes]
rs57745459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57826383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57955495	1.00[AMR][1000 genomes]
rs58407913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60271256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166822	1.00[AMR][1000 genomes]
rs61169935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61290854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61512918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274116	1.00[AMR][1000 genomes]
rs73274136	1.00[AMR][1000 genomes]
rs73274156	1.00[AMR][1000 genomes]
rs73274164	1.00[AMR][1000 genomes]
rs73282473	0.90[AFR][1000 genomes]
rs73282490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282491	1.00[AMR][1000 genomes]
rs73284247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286265	1.00[AMR][1000 genomes]
rs73286273	1.00[AMR][1000 genomes]
rs73286279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74058874	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68601800-68613600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68601800-68614400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:68601800-68614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:68601800-68615600	Enhancers	HMEC	breast
5	chr14:68602400-68609600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:68602400-68610200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:68603800-68611400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:68603800-68612400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68603800-68612800	Enhancers	Fetal Intestine Large	intestine
10	chr14:68603800-68614000	Enhancers	Fetal Intestine Small	intestine
11	chr14:68603800-68614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:68603800-68614600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:68603800-68614800	Enhancers	HSMM	muscle
14	chr14:68604000-68611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:68604200-68614800	Enhancers	NHLF	lung
16	chr14:68604400-68609800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:68604400-68613200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:68604600-68609600	Weak transcription	Lung	lung
19	chr14:68604800-68609800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:68604800-68613000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:68605000-68609800	Weak transcription	Placenta	Placenta
22	chr14:68605000-68614800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:68605200-68610200	Weak transcription	Colonic Mucosa	Colon
24	chr14:68605600-68611800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr14:68605800-68613800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:68606200-68610400	Enhancers	Rectal Smooth Muscle	rectum
27	chr14:68606200-68613200	Enhancers	Osteobl	bone
28	chr14:68606200-68614000	Enhancers	Fetal Muscle Leg	muscle
29	chr14:68606400-68609600	Weak transcription	Spleen	Spleen
30	chr14:68606400-68613400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:68606800-68609600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:68606800-68609600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:68606800-68609600	Weak transcription	Thymus	Thymus
34	chr14:68606800-68610200	Weak transcription	Esophagus	oesophagus
35	chr14:68606800-68610400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:68606800-68614800	Enhancers	NHDF-Ad	bronchial
37	chr14:68607000-68610000	Weak transcription	Brain Germinal Matrix	brain
38	chr14:68607000-68610400	Weak transcription	Gastric	stomach
39	chr14:68607200-68609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:68607200-68609600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:68607200-68609600	Weak transcription	Pancreas	Pancrea
42	chr14:68607200-68609800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:68607200-68610400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:68607200-68610400	Weak transcription	Aorta	Aorta
45	chr14:68607200-68623600	Weak transcription	Ovary	ovary
46	chr14:68607400-68609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:68607400-68609600	Weak transcription	Right Atrium	heart
48	chr14:68607400-68609600	Weak transcription	Small Intestine	intestine
49	chr14:68607400-68609800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:68607400-68609800	Weak transcription	HepG2	liver

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