Variant report

Variant	rs73280491
Chromosome Location	chr14:68374849-68374850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs34805563	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35080917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35106153	1.00[AMR][1000 genomes]
rs35575056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35577122	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35917338	1.00[AMR][1000 genomes]
rs57048278	1.00[AMR][1000 genomes]
rs58431859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58724136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59429458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60273960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61011477	1.00[AMR][1000 genomes]
rs61214213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61341378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61584136	1.00[AMR][1000 genomes]
rs73276671	1.00[AMR][1000 genomes]
rs73276676	1.00[AMR][1000 genomes]
rs73276687	1.00[AMR][1000 genomes]
rs73278432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280405	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280424	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280438	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282473	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68374600-68375200	Enhancers	Ovary	ovary
3	chr14:68374600-68375600	Enhancers	Fetal Muscle Leg	muscle
4	chr14:68374800-68375200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:68374800-68375600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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