Variant report

Variant	rs73288113
Chromosome Location	chr17:17517624-17517625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17255767..17258601-chr17:17515737..17518655,2	K562	blood:
2	chr17:17426099..17426869-chr17:17516971..17517681,2	MCF-7	breast:
3	chr17:17493364..17496787-chr17:17515536..17518702,4	MCF-7	breast:
4	chr17:17259108..17259812-chr17:17516987..17517700,3	MCF-7	breast:
5	chr17:17512228..17514330-chr17:17515822..17518656,2	K562	blood:

Variant related genes	Relation type
ENSG00000264666	Chromatin interaction
ENSG00000133027	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12453139	0.87[ASN][1000 genomes]
rs12600976	0.80[ASN][1000 genomes]
rs12603596	0.82[ASN][1000 genomes]
rs1809205	0.85[ASN][1000 genomes]
rs35474845	0.82[ASN][1000 genomes]
rs4924797	0.84[ASN][1000 genomes]
rs4925027	0.86[ASN][1000 genomes]
rs4925048	0.84[ASN][1000 genomes]
rs4925049	0.82[ASN][1000 genomes]
rs4925051	0.82[ASN][1000 genomes]
rs55793618	0.84[ASN][1000 genomes]
rs55844525	0.82[ASN][1000 genomes]
rs56745821	0.86[ASN][1000 genomes]
rs57608533	0.84[ASN][1000 genomes]
rs58023844	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60410257	0.82[ASN][1000 genomes]
rs6502611	0.82[ASN][1000 genomes]
rs7209194	0.82[ASN][1000 genomes]
rs7209666	0.82[ASN][1000 genomes]
rs7219777	0.84[ASN][1000 genomes]
rs7225010	0.80[ASN][1000 genomes]
rs73288103	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73290118	0.82[ASN][1000 genomes]
rs73290119	0.82[ASN][1000 genomes]
rs73290129	0.82[ASN][1000 genomes]
rs73290131	0.82[ASN][1000 genomes]
rs8074272	0.82[ASN][1000 genomes]
rs8081810	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9890324	0.82[ASN][1000 genomes]
rs9891282	0.83[ASN][1000 genomes]
rs9896880	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17509400-17517800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr17:17516000-17519200	Weak transcription	Right Atrium	heart
3	chr17:17517200-17529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr17:17517400-17522800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr17:17517400-17522800	Weak transcription	Monocytes-CD14+_RO01746	blood

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