Variant report
Variant | rs8081810 |
---|---|
Chromosome Location | chr17:17522944-17522945 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12453139 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rs12600976 | 0.82[ASN][1000 genomes] |
rs12603596 | 0.80[ASN][1000 genomes] |
rs1809205 | 0.84[ASN][1000 genomes] |
rs35474845 | 0.84[ASN][1000 genomes] |
rs4924797 | 0.86[ASN][1000 genomes] |
rs4925027 | 0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rs4925048 | 0.82[CHB][hapmap];0.88[CHD][hapmap];0.86[ASN][1000 genomes] |
rs4925049 | 0.84[ASN][1000 genomes] |
rs4925051 | 0.84[ASN][1000 genomes] |
rs55793618 | 0.86[ASN][1000 genomes] |
rs55844525 | 0.84[ASN][1000 genomes] |
rs56745821 | 0.85[ASN][1000 genomes] |
rs57226466 | 0.81[ASN][1000 genomes] |
rs57608533 | 0.85[ASN][1000 genomes] |
rs58023844 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs60410257 | 0.83[ASN][1000 genomes] |
rs60441671 | 0.81[ASN][1000 genomes] |
rs6502611 | 0.83[ASN][1000 genomes] |
rs7209194 | 0.83[ASN][1000 genomes] |
rs7209666 | 0.83[ASN][1000 genomes] |
rs7219777 | 0.85[CHB][hapmap];0.86[ASN][1000 genomes] |
rs7225010 | 0.82[ASN][1000 genomes] |
rs73288103 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73288113 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs73290118 | 0.84[ASN][1000 genomes] |
rs73290119 | 0.84[ASN][1000 genomes] |
rs73290129 | 0.83[ASN][1000 genomes] |
rs73290131 | 0.83[ASN][1000 genomes] |
rs8074272 | 0.84[ASN][1000 genomes] |
rs9890064 | 0.83[CHB][hapmap];0.85[JPT][hapmap] |
rs9890324 | 0.83[ASN][1000 genomes] |
rs9891282 | 0.82[ASN][1000 genomes] |
rs9896880 | 0.82[CHB][hapmap];0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv907748 | chr17:17412032-17782404 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 89 gene(s) | inside rSNPs | diseases |
2 | nsv1065270 | chr17:17430116-17823086 | Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 91 gene(s) | inside rSNPs | diseases |
3 | nsv543236 | chr17:17430116-17823086 | Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 91 gene(s) | inside rSNPs | diseases |
4 | nsv833384 | chr17:17491483-17645648 | Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
5 | nsv869118 | chr17:17509896-17599850 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:17517200-17529400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr17:17522800-17524400 | Enhancers | Primary neutrophils fromperipheralblood | blood |
3 | chr17:17522800-17524600 | Enhancers | Monocytes-CD14+_RO01746 | blood |