Variant report

Variant	rs9891282
Chromosome Location	chr17:17508481-17508482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17504788..17507617-chr17:17507933..17511069,3	K562	blood:
2	chr17:17495233..17498168-chr17:17505537..17510752,5	MCF-7	breast:
3	chr17:17494037..17495633-chr17:17507321..17510221,2	K562	blood:

Variant related genes	Relation type
ENSG00000133027	Chromatin interaction
ENSG00000264666	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12453139	0.90[ASN][1000 genomes]
rs12603596	0.98[ASN][1000 genomes]
rs1809205	0.92[ASN][1000 genomes]
rs4925027	0.90[ASN][1000 genomes]
rs56745821	0.94[ASN][1000 genomes]
rs57928542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73288103	0.93[ASN][1000 genomes]
rs73288113	0.83[ASN][1000 genomes]
rs8064566	0.85[ASN][1000 genomes]
rs8076452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8081810	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833383	chr17:17464635-17509138	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17496200-17508600	Weak transcription	Fetal Intestine Small	intestine
2	chr17:17496400-17508600	Weak transcription	HSMMtube	muscle
3	chr17:17496600-17508600	Weak transcription	Fetal Stomach	stomach
4	chr17:17496600-17508800	Weak transcription	Osteobl	bone
5	chr17:17507000-17509800	Enhancers	K562	blood
6	chr17:17507000-17512600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:17507200-17508800	Weak transcription	Fetal Lung	lung
8	chr17:17507200-17509400	Enhancers	HepG2	liver
9	chr17:17507200-17510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr17:17507200-17512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:17507400-17508600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr17:17507600-17508600	Weak transcription	Fetal Heart	heart
13	chr17:17507600-17509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr17:17508000-17508800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr17:17508000-17510000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr17:17508000-17510400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:17508200-17508600	Enhancers	Lung	lung
18	chr17:17508200-17509200	Enhancers	Right Atrium	heart
19	chr17:17508200-17509400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:17508200-17509400	Enhancers	Liver	Liver
21	chr17:17508200-17510600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr17:17508400-17508600	Enhancers	Fetal Muscle Trunk	muscle
23	chr17:17508400-17508600	Enhancers	Fetal Muscle Leg	muscle
24	chr17:17508400-17509000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:17508400-17509000	Enhancers	Placenta	Placenta
26	chr17:17508400-17509200	Enhancers	Right Ventricle	heart
27	chr17:17508400-17510600	Enhancers	Spleen	Spleen
28	chr17:17508400-17510800	Enhancers	NHDF-Ad	bronchial

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