Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11978553	1.00[EUR][1000 genomes]
rs11980207	1.00[EUR][1000 genomes]
rs11980890	1.00[EUR][1000 genomes]
rs12112715	1.00[EUR][1000 genomes]
rs17151642	1.00[EUR][1000 genomes]
rs17151705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28507884	1.00[EUR][1000 genomes]
rs28530564	1.00[EUR][1000 genomes]
rs55666498	1.00[EUR][1000 genomes]
rs55800607	1.00[EUR][1000 genomes]
rs56914684	1.00[EUR][1000 genomes]
rs57244176	1.00[EUR][1000 genomes]
rs57404942	1.00[EUR][1000 genomes]
rs58446425	1.00[EUR][1000 genomes]
rs6956001	1.00[EUR][1000 genomes]
rs73290683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691547	1.00[EUR][1000 genomes]
rs73691556	1.00[EUR][1000 genomes]
rs73691559	1.00[EUR][1000 genomes]
rs73691560	1.00[EUR][1000 genomes]
rs73691561	1.00[EUR][1000 genomes]
rs73691563	1.00[EUR][1000 genomes]
rs73691564	1.00[EUR][1000 genomes]
rs73691569	1.00[EUR][1000 genomes]
rs73691573	1.00[EUR][1000 genomes]
rs73691587	1.00[EUR][1000 genomes]
rs73691588	1.00[EUR][1000 genomes]
rs73691593	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
4	nsv1033664	chr7:25471881-25503391	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1033757	chr7:25472222-25504421	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25499000-25523800	Weak transcription	Gastric	stomach

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