Variant report
| Variant | rs73691561 |
|---|---|
| Chromosome Location | chr7:25404597-25404598 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:55833870..55836092-chr7:25404426..25407387,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11978553 | 1.00[EUR][1000 genomes] |
| rs11980207 | 1.00[EUR][1000 genomes] |
| rs11980890 | 1.00[EUR][1000 genomes] |
| rs12112715 | 1.00[EUR][1000 genomes] |
| rs17151642 | 1.00[EUR][1000 genomes] |
| rs28507884 | 1.00[EUR][1000 genomes] |
| rs28530564 | 1.00[EUR][1000 genomes] |
| rs55666498 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55800607 | 1.00[EUR][1000 genomes] |
| rs56105280 | 0.97[AFR][1000 genomes] |
| rs56914684 | 1.00[EUR][1000 genomes] |
| rs57244176 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57404942 | 1.00[EUR][1000 genomes] |
| rs58446425 | 1.00[EUR][1000 genomes] |
| rs6956001 | 1.00[EUR][1000 genomes] |
| rs73290680 | 1.00[EUR][1000 genomes] |
| rs73290683 | 1.00[EUR][1000 genomes] |
| rs73691547 | 1.00[EUR][1000 genomes] |
| rs73691556 | 1.00[EUR][1000 genomes] |
| rs73691559 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691560 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691563 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691564 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691569 | 1.00[EUR][1000 genomes] |
| rs73691573 | 1.00[EUR][1000 genomes] |
| rs73691587 | 1.00[EUR][1000 genomes] |
| rs73691588 | 1.00[EUR][1000 genomes] |
| rs73691593 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606424 | chr7:24982529-25466521 | Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv606426 | chr7:25254125-25621579 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv887846 | chr7:25371700-25407621 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25400200-25409400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:25400600-25409200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
