Variant report
| Variant | rs73691573 |
|---|---|
| Chromosome Location | chr7:25437140-25437141 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11978553 | 1.00[EUR][1000 genomes] |
| rs11980207 | 1.00[EUR][1000 genomes] |
| rs11980890 | 1.00[EUR][1000 genomes] |
| rs12112715 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17151642 | 1.00[EUR][1000 genomes] |
| rs28507884 | 1.00[EUR][1000 genomes] |
| rs28530564 | 1.00[EUR][1000 genomes] |
| rs55666498 | 1.00[EUR][1000 genomes] |
| rs55800607 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56914684 | 1.00[EUR][1000 genomes] |
| rs57244176 | 1.00[EUR][1000 genomes] |
| rs57404942 | 1.00[EUR][1000 genomes] |
| rs58446425 | 1.00[EUR][1000 genomes] |
| rs6956001 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6956723 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73290680 | 1.00[EUR][1000 genomes] |
| rs73290683 | 1.00[EUR][1000 genomes] |
| rs73691547 | 1.00[EUR][1000 genomes] |
| rs73691556 | 1.00[EUR][1000 genomes] |
| rs73691559 | 1.00[EUR][1000 genomes] |
| rs73691560 | 1.00[EUR][1000 genomes] |
| rs73691561 | 1.00[EUR][1000 genomes] |
| rs73691563 | 1.00[EUR][1000 genomes] |
| rs73691564 | 1.00[EUR][1000 genomes] |
| rs73691569 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691587 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691588 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691593 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606424 | chr7:24982529-25466521 | Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv606426 | chr7:25254125-25621579 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016813 | chr7:25405859-26150509 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| 4 | nsv538803 | chr7:25405859-26150509 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 108 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:25436800-25441200 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr7:25437000-25437600 | Weak transcription | Fetal Muscle Leg | muscle |
| 3 | chr7:25437000-25440800 | Weak transcription | Fetal Kidney | kidney |
