Variant report

Variant	rs73294177
Chromosome Location	chr17:17637937-17637938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17636877..17639787-chr17:17641279..17643211,2	K562	blood:
2	chr17:17635291..17636862-chr17:17637712..17640520,2	K562	blood:
3	chr17:17606107..17608370-chr17:17636433..17639008,2	MCF-7	breast:
4	chr17:17633057..17635019-chr17:17635341..17638302,3	K562	blood:
5	chr17:17636877..17639787-chr17:17641279..17643211,3	K562	blood:
6	chr17:17623843..17637985-chr17:17653006..17664308,33	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1883753	1.00[AMR][1000 genomes]
rs28536528	0.82[ASN][1000 genomes]
rs28669696	0.82[ASN][1000 genomes]
rs58713387	0.82[ASN][1000 genomes]
rs73292256	0.82[ASN][1000 genomes]
rs73294188	0.83[EUR][1000 genomes]
rs9303142	0.82[ASN][1000 genomes]
rs9890330	0.82[ASN][1000 genomes]
rs9890929	0.82[ASN][1000 genomes]
rs9891217	0.82[ASN][1000 genomes]
rs9905513	0.82[ASN][1000 genomes]
rs9907322	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv907752	chr17:17569012-17750907	Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
6	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
7	nsv907753	chr17:17573539-17747289	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
8	nsv907754	chr17:17573539-17782404	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
9	nsv1061126	chr17:17578826-17803194	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv543238	chr17:17578826-17803194	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
11	nsv833385	chr17:17594037-17765578	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
12	nsv1058884	chr17:17594370-17803194	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
13	nsv543240	chr17:17594370-17803194	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv543241	chr17:17596222-17703059	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1064176	chr17:17596222-17803194	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv543242	chr17:17596222-17803194	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
17	nsv1062361	chr17:17598407-17746899	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
18	nsv543243	chr17:17598407-17746899	Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
19	nsv907756	chr17:17619859-17747289	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
20	nsv522668	chr17:17619859-17752809	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
21	nsv907757	chr17:17619859-17752809	Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
22	nsv907758	chr17:17619859-17782404	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
23	nsv907759	chr17:17619859-17802478	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
24	nsv532109	chr17:17630064-17700497	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1059949	chr17:17632590-17803194	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
26	nsv543244	chr17:17632590-17803194	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17616200-17642000	Weak transcription	K562	blood
2	chr17:17627800-17642600	Weak transcription	Aorta	Aorta
3	chr17:17628800-17641000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr17:17628800-17641200	Weak transcription	Fetal Kidney	kidney
5	chr17:17629600-17641200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr17:17629800-17640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:17629800-17642000	Weak transcription	HepG2	liver
8	chr17:17630000-17638000	Strong transcription	Fetal Intestine Small	intestine
9	chr17:17630000-17639800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:17630000-17641200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr17:17630200-17641200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr17:17630400-17639600	Weak transcription	Primary B cells from cord blood	blood
13	chr17:17630400-17640800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:17630600-17641000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:17630800-17638400	Enhancers	Right Ventricle	heart
16	chr17:17630800-17646000	Enhancers	Fetal Heart	heart
17	chr17:17631000-17641400	Weak transcription	HUVEC	blood vessel
18	chr17:17631400-17642200	Weak transcription	Liver	Liver
19	chr17:17631400-17643600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr17:17632200-17638000	Enhancers	Brain Cingulate Gyrus	brain
21	chr17:17632400-17638000	Weak transcription	Colonic Mucosa	Colon
22	chr17:17632600-17639600	Weak transcription	Thymus	Thymus
23	chr17:17633000-17640600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:17633000-17641000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:17633200-17638000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr17:17633200-17639200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr17:17633400-17639000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr17:17633400-17641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr17:17633600-17638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr17:17633600-17639600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr17:17633800-17639400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr17:17634000-17640400	Weak transcription	Placenta	Placenta
33	chr17:17634200-17638200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:17634200-17639400	Strong transcription	Fetal Stomach	stomach
35	chr17:17634400-17641800	Weak transcription	Adipose Nuclei	Adipose
36	chr17:17634600-17641200	Weak transcription	Hela-S3	cervix
37	chr17:17634800-17638400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr17:17634800-17639200	Weak transcription	Ovary	ovary
39	chr17:17634800-17640000	Weak transcription	Colon Smooth Muscle	Colon
40	chr17:17635400-17638000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr17:17635600-17638200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:17635800-17638400	Enhancers	Stomach Mucosa	stomach
43	chr17:17636000-17640600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr17:17636200-17638000	Weak transcription	Gastric	stomach
45	chr17:17636200-17638000	Enhancers	HSMMtube	muscle
46	chr17:17636200-17639000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr17:17636200-17639000	Weak transcription	Right Atrium	heart
48	chr17:17636200-17639000	Weak transcription	Spleen	Spleen
49	chr17:17636200-17639600	Weak transcription	Psoas Muscle	Psoas
50	chr17:17636200-17648200	Weak transcription	Dnd41	blood

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