Variant report

Variant	rs9891217
Chromosome Location	chr17:17552233-17552234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12449807	1.00[JPT][hapmap]
rs13342369	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28536528	1.00[ASN][1000 genomes]
rs28669696	1.00[ASN][1000 genomes]
rs58713387	1.00[ASN][1000 genomes]
rs73292256	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294177	0.82[ASN][1000 genomes]
rs9303142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9890330	1.00[ASN][1000 genomes]
rs9890929	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9897150	1.00[JPT][hapmap]
rs9905513	1.00[ASN][1000 genomes]
rs9907322	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv907751	chr17:17530554-17581184	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17550800-17552400	Enhancers	Fetal Intestine Small	intestine
2	chr17:17551800-17552400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr17:17551800-17552400	Enhancers	Fetal Stomach	stomach
4	chr17:17551800-17552600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:17552000-17552400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:17552000-17552400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr17:17552000-17552400	Enhancers	HSMMtube	muscle
8	chr17:17552000-17552600	Bivalent Enhancer	HepG2	liver
9	chr17:17552200-17552400	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr17:17552200-17552600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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