Variant report

Variant	rs73302800
Chromosome Location	chr5:124276782-124276783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1031205	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17254960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17448900	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17448948	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57063427	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60383340	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6880658	0.84[EUR][1000 genomes]
rs6897935	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302753	0.84[EUR][1000 genomes]
rs73302755	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73302762	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73302776	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302778	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73304713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7736156	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124272200-124284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124275400-124277000	Weak transcription	Dnd41	blood
3	chr5:124275600-124277400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:124276000-124277400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:124276400-124278000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:124276600-124277600	Weak transcription	Placenta	Placenta
7	chr5:124276600-124277800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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