Variant report

Variant	rs6880658
Chromosome Location	chr5:124238128-124238129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1031205	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254960	0.81[EUR][1000 genomes]
rs17448900	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17448948	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17514006	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17514201	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17514388	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57063427	0.94[EUR][1000 genomes]
rs60383340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6864634	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6897935	0.90[EUR][1000 genomes]
rs73302753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302762	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302776	0.90[EUR][1000 genomes]
rs73302778	0.90[EUR][1000 genomes]
rs73302783	0.90[EUR][1000 genomes]
rs73302800	0.84[EUR][1000 genomes]
rs73304713	0.84[EUR][1000 genomes]
rs73304720	0.81[EUR][1000 genomes]
rs7736156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124235200-124242000	Weak transcription	NHDF-Ad	bronchial
3	chr5:124236600-124238800	Enhancers	Brain Substantia Nigra	brain
4	chr5:124236600-124238800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:124236600-124240000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:124236800-124238400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:124236800-124238600	Enhancers	NH-A	brain
8	chr5:124236800-124238800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:124236800-124240200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:124237000-124238600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:124237000-124243400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:124237200-124238800	Enhancers	Fetal Heart	heart
13	chr5:124237200-124238800	Enhancers	Stomach Mucosa	stomach
14	chr5:124237200-124240000	Enhancers	Dnd41	blood
15	chr5:124237400-124238600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr5:124237400-124238800	Enhancers	Primary hematopoietic stem cells	blood
17	chr5:124237400-124239000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:124237400-124239400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:124237400-124239600	Enhancers	Primary B cells from cord blood	blood
20	chr5:124237600-124238200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:124237600-124238200	Enhancers	Colon Smooth Muscle	Colon
22	chr5:124237600-124238200	Enhancers	Hela-S3	cervix
23	chr5:124237600-124238400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr5:124237600-124238400	Enhancers	Adipose Nuclei	Adipose
25	chr5:124237600-124238400	Enhancers	Brain Anterior Caudate	brain
26	chr5:124237600-124238400	Enhancers	Fetal Intestine Small	intestine
27	chr5:124237600-124238400	Enhancers	Fetal Stomach	stomach
28	chr5:124237600-124238400	Enhancers	Psoas Muscle	Psoas
29	chr5:124237600-124238400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr5:124237600-124238600	Enhancers	Brain Cingulate Gyrus	brain
31	chr5:124237600-124238600	Enhancers	Brain Hippocampus Middle	brain
32	chr5:124237600-124238600	Enhancers	Fetal Intestine Large	intestine
33	chr5:124237600-124238600	Enhancers	Fetal Kidney	kidney
34	chr5:124237600-124238600	Enhancers	Fetal Muscle Leg	muscle
35	chr5:124237600-124238600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr5:124237600-124238600	Enhancers	HSMMtube	muscle
37	chr5:124237600-124238600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr5:124237600-124238800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:124237600-124238800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr5:124237600-124239000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:124237600-124239400	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr5:124237600-124239600	Enhancers	Primary B cells from peripheral blood	blood
43	chr5:124237600-124243000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:124237600-124246800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:124237800-124238200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
46	chr5:124237800-124238200	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr5:124237800-124238200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:124237800-124238400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
49	chr5:124237800-124238400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr5:124237800-124238400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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