Variant report

Variant	rs17514201
Chromosome Location	chr5:124219836-124219837
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1031205	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs17448900	0.88[EUR][1000 genomes]
rs17448948	0.88[EUR][1000 genomes]
rs17514006	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17514388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57063427	0.88[EUR][1000 genomes]
rs60383340	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6864634	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6880658	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6897935	0.84[EUR][1000 genomes]
rs73302753	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73302755	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73302762	0.88[EUR][1000 genomes]
rs73302776	0.84[EUR][1000 genomes]
rs73302778	0.84[EUR][1000 genomes]
rs73302783	0.84[EUR][1000 genomes]
rs7736156	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124209600-124224800	Weak transcription	Fetal Brain Male	brain
2	chr5:124214600-124221000	Weak transcription	Psoas Muscle	Psoas
3	chr5:124215400-124222600	Weak transcription	Brain Anterior Caudate	brain
4	chr5:124215800-124224800	Weak transcription	Pancreas	Pancrea
5	chr5:124217400-124222200	Weak transcription	Brain Angular Gyrus	brain
6	chr5:124217600-124223400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:124218400-124220000	Enhancers	Fetal Stomach	stomach
8	chr5:124218400-124223400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:124218600-124220200	Enhancers	Duodenum Mucosa	Duodenum
10	chr5:124218800-124222400	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:124219400-124220400	Enhancers	Liver	Liver
12	chr5:124219400-124223800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:124219600-124220000	Enhancers	Fetal Lung	lung
14	chr5:124219600-124220200	Enhancers	Stomach Mucosa	stomach
15	chr5:124219600-124220400	Enhancers	Fetal Intestine Small	intestine
16	chr5:124219600-124222200	Weak transcription	Dnd41	blood
17	chr5:124219800-124220000	Enhancers	Small Intestine	intestine
18	chr5:124219800-124220400	Enhancers	Fetal Intestine Large	intestine
19	chr5:124219800-124222600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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