Variant report

Variant	rs6864634
Chromosome Location	chr5:124233789-124233790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1031205	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17448900	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17448948	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17514006	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17514201	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17514388	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57063427	0.88[EUR][1000 genomes]
rs60383340	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6880658	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6897935	0.84[EUR][1000 genomes]
rs73302753	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302755	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302762	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73302776	0.84[EUR][1000 genomes]
rs73302778	0.84[EUR][1000 genomes]
rs73302783	0.84[EUR][1000 genomes]
rs7736156	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324715	chr5:124233278-124235826	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
2	esv3427099	chr5:124233328-124236251	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
3	esv3339088	chr5:124233753-124235801	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124223200-124242200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124225800-124237800	Weak transcription	Fetal Lung	lung
3	chr5:124233000-124233800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124233400-124234000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr5:124233400-124237600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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