Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1031205	0.90[EUR][1000 genomes]
rs17254960	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17448900	0.90[EUR][1000 genomes]
rs17448948	0.90[EUR][1000 genomes]
rs17514201	0.84[EUR][1000 genomes]
rs17514388	0.84[EUR][1000 genomes]
rs57063427	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60383340	0.90[EUR][1000 genomes]
rs6864634	0.84[EUR][1000 genomes]
rs6880658	0.90[EUR][1000 genomes]
rs6897935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302753	0.90[EUR][1000 genomes]
rs73302755	0.90[EUR][1000 genomes]
rs73302762	0.90[EUR][1000 genomes]
rs73302778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302783	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302800	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73304713	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73304720	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73782506	0.81[AFR][1000 genomes]
rs73782525	0.81[AFR][1000 genomes]
rs7736156	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:124264000-124271400	Weak transcription	HSMM	muscle
4	chr5:124264200-124268400	Weak transcription	NHEK	skin
5	chr5:124264600-124268400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124264600-124268600	Weak transcription	HMEC	breast
7	chr5:124266600-124266800	Enhancers	Rectal Smooth Muscle	rectum

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