Variant report

Variant	rs73310474
Chromosome Location	chr10:92980773-92980774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92980435..92981251-chr15:44719397..44720060,2	Hela-S3	cervix:
2	chr10:92980687..92983885-chr10:92987198..92989687,3	K562	blood:

Variant related genes	Relation type
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10509625	0.82[AFR][1000 genomes]
rs10881908	0.93[AFR][1000 genomes]
rs11186517	0.96[AFR][1000 genomes]
rs2421473	0.96[AFR][1000 genomes]
rs2421475	0.82[AFR][1000 genomes]
rs73312470	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3361176	chr10:92979397-92981945	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92979600-92981200	Active TSS	K562	blood
2	chr10:92979600-92981400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:92979600-92981600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:92979800-92980800	Active TSS	Brain Germinal Matrix	brain
5	chr10:92979800-92980800	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:92979800-92981000	Active TSS	Fetal Lung	lung
7	chr10:92979800-92981000	Active TSS	Fetal Stomach	stomach
8	chr10:92979800-92981000	Active TSS	Psoas Muscle	Psoas
9	chr10:92979800-92981000	Active TSS	HSMM	muscle
10	chr10:92979800-92981200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr10:92979800-92981200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:92979800-92981200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
13	chr10:92979800-92981200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:92979800-92981200	Active TSS	Fetal Kidney	kidney
15	chr10:92979800-92981200	Active TSS	Rectal Smooth Muscle	rectum
16	chr10:92979800-92981200	Active TSS	HSMMtube	muscle
17	chr10:92979800-92981400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr10:92979800-92981400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:92979800-92981400	Active TSS	Fetal Muscle Trunk	muscle
20	chr10:92979800-92981600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:92979800-92981600	Active TSS	Aorta	Aorta
22	chr10:92979800-92981600	Active TSS	Left Ventricle	heart
23	chr10:92979800-92981600	Active TSS	NHDF-Ad	bronchial
24	chr10:92979800-92981800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr10:92979800-92981800	Active TSS	Fetal Intestine Large	intestine
26	chr10:92979800-92982200	Active TSS	Right Atrium	heart
27	chr10:92980000-92981200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr10:92980000-92981200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:92980000-92981200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:92980000-92981200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:92980000-92981200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:92980000-92981200	Active TSS	Colon Smooth Muscle	Colon
33	chr10:92980000-92981200	Active TSS	Thymus	Thymus
34	chr10:92980000-92981400	Active TSS	Gastric	stomach
35	chr10:92980000-92981400	Active TSS	Lung	lung
36	chr10:92980000-92981400	Active TSS	Ovary	ovary
37	chr10:92980000-92981400	Active TSS	A549	lung
38	chr10:92980000-92981600	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr10:92980000-92981800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:92980000-92984200	Active TSS	Right Ventricle	heart
41	chr10:92980200-92980800	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:92980200-92980800	Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr10:92980200-92980800	Active TSS	Primary T cells from cord blood	blood
44	chr10:92980200-92980800	Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr10:92980200-92981000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:92980200-92981000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:92980200-92981000	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:92980200-92981000	Active TSS	Primary monocytes fromperipheralblood	blood
49	chr10:92980200-92981000	Active TSS	Primary B cells from cord blood	blood
50	chr10:92980200-92981000	Active TSS	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links