Variant report

Variant	rs10509625
Chromosome Location	chr10:93050333-93050334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93041753..93044578-chr10:93048490..93051175,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10430649	0.82[JPT][hapmap]
rs10881908	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881909	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186517	0.90[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs2421473	0.90[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs2421475	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72815418	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72815446	0.84[EUR][1000 genomes]
rs73310474	0.82[AFR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93015400-93057800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:93015600-93058200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:93016600-93056200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:93039000-93052000	Weak transcription	GM12878-XiMat	blood
5	chr10:93039000-93058000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:93040400-93050400	Weak transcription	HepG2	liver
7	chr10:93043600-93057800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:93044200-93051600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:93044600-93057600	Weak transcription	Primary T cells from cord blood	blood
10	chr10:93044800-93057800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93045000-93055200	Weak transcription	Dnd41	blood
12	chr10:93046200-93057800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:93046600-93051200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:93047000-93053800	Weak transcription	HSMM	muscle
15	chr10:93047600-93051000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:93047600-93051200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:93048000-93058200	Weak transcription	Right Atrium	heart
18	chr10:93049600-93051600	Weak transcription	Fetal Lung	lung
19	chr10:93049800-93058200	Weak transcription	HSMMtube	muscle
20	chr10:93050000-93054000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:93050000-93058200	Weak transcription	Psoas Muscle	Psoas
22	chr10:93050200-93050400	Enhancers	Lung	lung

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