Variant report

Variant	rs2421473
Chromosome Location	chr10:92996070-92996071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92980258..92981910-chr10:92993962..92996141,2	MCF-7	breast:
2	chr10:92992756..92995380-chr10:92995607..92998722,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180628	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509625	0.85[AFR][1000 genomes]
rs10881908	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881909	0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11186517	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2421475	0.85[AFR][1000 genomes]
rs72815418	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73310474	0.96[AFR][1000 genomes]
rs73312470	0.87[AFR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92981400-92997800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:92981400-92998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:92981400-93013000	Weak transcription	Ovary	ovary
4	chr10:92981400-93031000	Weak transcription	Colonic Mucosa	Colon
5	chr10:92981800-92998000	Weak transcription	HMEC	breast
6	chr10:92981800-93013200	Weak transcription	Placenta	Placenta
7	chr10:92981800-93013400	Weak transcription	Fetal Stomach	stomach
8	chr10:92981800-93014600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:92981800-93021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:92982000-93006600	Weak transcription	HUVEC	blood vessel
11	chr10:92982200-93015400	Weak transcription	NHLF	lung
12	chr10:92982400-93001200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:92982600-93011600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr10:92982600-93014800	Weak transcription	Spleen	Spleen
15	chr10:92982600-93043800	Weak transcription	Fetal Brain Male	brain
16	chr10:92982800-93005600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:92982800-93012000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:92982800-93039800	Weak transcription	Hela-S3	cervix
19	chr10:92983800-93013200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:92984000-93005800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:92984000-93007600	Weak transcription	Psoas Muscle	Psoas
22	chr10:92984000-93007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:92984000-93013600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr10:92984200-93004000	Weak transcription	Right Ventricle	heart
25	chr10:92984200-93013400	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:92984400-93012200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:92984600-93007200	Weak transcription	A549	lung
28	chr10:92984800-93001200	Weak transcription	Thymus	Thymus
29	chr10:92984800-93005600	Weak transcription	Brain Anterior Caudate	brain
30	chr10:92984800-93007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:92985400-93007600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:92985400-93014800	Weak transcription	Small Intestine	intestine
33	chr10:92986400-93014600	Weak transcription	Fetal Intestine Small	intestine
34	chr10:92986600-92999600	Weak transcription	Brain Angular Gyrus	brain
35	chr10:92986600-93005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:92987200-93012000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:92987600-93001200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:92987600-93001200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:92987600-93002800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:92987600-93005400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:92987600-93005400	Weak transcription	Brain Hippocampus Middle	brain
42	chr10:92987600-93007200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:92987600-93007200	Weak transcription	K562	blood
44	chr10:92987600-93007600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:92987600-93012000	Weak transcription	Adipose Nuclei	Adipose
46	chr10:92987600-93012200	Weak transcription	Fetal Kidney	kidney
47	chr10:92987600-93014800	Weak transcription	Gastric	stomach
48	chr10:92987800-93001000	Weak transcription	HSMM	muscle
49	chr10:92987800-93001200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr10:92987800-93005400	Weak transcription	Osteobl	bone

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