Variant report

Variant	rs73311898
Chromosome Location	chr8:119808949-119808950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs61073261	1.00[AMR][1000 genomes]
rs61372731	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313868	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315516	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317569	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319393	1.00[AMR][1000 genomes]
rs73325086	1.00[AMR][1000 genomes]
rs73327130	1.00[AMR][1000 genomes]
rs7815228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119795600-119809200	Weak transcription	Aorta	Aorta
2	chr8:119801000-119809200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:119804600-119809200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:119805000-119809600	Enhancers	NHDF-Ad	bronchial
5	chr8:119808000-119809400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:119808000-119809400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:119808200-119809600	Enhancers	Hela-S3	cervix
8	chr8:119808400-119809200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:119808400-119809400	Enhancers	NH-A	brain
10	chr8:119808400-119809400	Enhancers	NHLF	lung
11	chr8:119808400-119809600	Enhancers	Osteobl	bone
12	chr8:119808600-119809000	Bivalent Enhancer	Stomach Mucosa	stomach
13	chr8:119808600-119809400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:119808600-119809400	Enhancers	HSMMtube	muscle
15	chr8:119808800-119809200	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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