Variant report

Variant	rs73313868
Chromosome Location	chr8:119849756-119849757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61073261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61372731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311844	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311846	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311898	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315516	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325086	1.00[AMR][1000 genomes]
rs73327130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119848200-119851600	Enhancers	Hela-S3	cervix
2	chr8:119848200-119852200	Enhancers	HMEC	breast
3	chr8:119848800-119850600	Enhancers	Fetal Intestine Small	intestine
4	chr8:119848800-119852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:119849000-119849800	Enhancers	Lung	lung
6	chr8:119849000-119850200	Enhancers	Fetal Intestine Large	intestine
7	chr8:119849000-119850800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:119849200-119850200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr8:119849400-119850000	Enhancers	HUVEC	blood vessel
10	chr8:119849400-119850400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:119849400-119850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:119849400-119850600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:119849400-119850600	Enhancers	NHEK	skin
14	chr8:119849600-119850200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr8:119849600-119850400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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