Variant report

Variant	rs73313879
Chromosome Location	chr8:119853482-119853483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61073261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61372731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311844	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311846	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73311898	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73313898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315516	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325086	1.00[AMR][1000 genomes]
rs73327130	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119850400-119855400	Weak transcription	NH-A	brain
2	chr8:119850400-119855600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:119850400-119855600	Weak transcription	HSMM	muscle
4	chr8:119850400-119855600	Weak transcription	Osteobl	bone
5	chr8:119850400-119856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:119852200-119855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:119853400-119854000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:119853400-119854000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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