Variant report

Variant	rs73319055
Chromosome Location	chr14:77956841-77956842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10147023	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10149323	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12433414	0.89[EUR][1000 genomes]
rs12436583	0.81[EUR][1000 genomes]
rs13379482	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28776598	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4903589	0.91[EUR][1000 genomes]
rs6574379	0.85[EUR][1000 genomes]
rs7147867	0.91[EUR][1000 genomes]
rs7155181	0.89[EUR][1000 genomes]
rs8004601	0.93[EUR][1000 genomes]
rs8005999	0.87[AFR][1000 genomes]
rs8010250	0.93[EUR][1000 genomes]
rs8010934	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77950400-77957000	Weak transcription	Fetal Kidney	kidney
2	chr14:77951600-77957000	Weak transcription	Placenta	Placenta
3	chr14:77952400-77957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:77956200-77957000	Weak transcription	HepG2	liver
6	chr14:77956800-77957600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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