Variant report

Variant	rs73321219
Chromosome Location	chr8:121697581-121697582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11988273	1.00[AMR][1000 genomes]
rs11991454	1.00[AMR][1000 genomes]
rs4132497	1.00[AMR][1000 genomes]
rs73323141	1.00[AMR][1000 genomes]
rs7812415	1.00[AMR][1000 genomes]
rs9969409	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6369	chr8:121654665-121699920	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121672600-121699600	Weak transcription	HSMM	muscle
2	chr8:121679800-121714600	Weak transcription	Spleen	Spleen
3	chr8:121680600-121697600	Weak transcription	Gastric	stomach
4	chr8:121680600-121704600	Weak transcription	Fetal Intestine Large	intestine
5	chr8:121680800-121701000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:121681400-121704200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:121681600-121699600	Weak transcription	Osteobl	bone
8	chr8:121681600-121701000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:121682200-121700400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:121682800-121698000	Weak transcription	Primary B cells from cord blood	blood
11	chr8:121685400-121714400	Weak transcription	Pancreas	Pancrea
12	chr8:121685600-121714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr8:121686200-121697600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:121686600-121704400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr8:121686800-121709000	Weak transcription	Small Intestine	intestine
16	chr8:121687000-121697600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:121687000-121704200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:121688200-121699600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:121688200-121699600	Weak transcription	NHLF	lung
20	chr8:121688200-121701000	Weak transcription	Psoas Muscle	Psoas
21	chr8:121690200-121706600	Strong transcription	HepG2	liver
22	chr8:121690600-121699200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:121690800-121699600	Weak transcription	HSMMtube	muscle
24	chr8:121691200-121703600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:121691400-121698200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr8:121691400-121705200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:121695000-121704000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr8:121695400-121699600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:121696000-121698600	Strong transcription	Liver	Liver
30	chr8:121696000-121700000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:121696800-121699600	Weak transcription	Primary T cells from cord blood	blood
32	chr8:121696800-121703200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr8:121697000-121698800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr8:121697200-121697600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr8:121697200-121697600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr8:121697200-121697800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:121697200-121697800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr8:121697200-121697800	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr8:121697200-121697800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr8:121697200-121697800	Enhancers	Placenta	Placenta
41	chr8:121697200-121697800	ZNF genes & repeats	Fetal Stomach	stomach
42	chr8:121697200-121697800	ZNF genes & repeats	Lung	lung
43	chr8:121697200-121698400	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr8:121697200-121698600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:121697200-121698800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr8:121697400-121697600	ZNF genes & repeats	Esophagus	oesophagus
47	chr8:121697400-121697800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:121697400-121697800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr8:121697400-121697800	ZNF genes & repeats	Thymus	Thymus
50	chr8:121697400-121697800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links