Variant report

Variant	rs9969409
Chromosome Location	chr8:121591138-121591139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121590814..121592983-chr8:121597409..121599196,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11988273	1.00[AMR][1000 genomes]
rs11991454	1.00[AMR][1000 genomes]
rs4132497	1.00[AMR][1000 genomes]
rs73321219	1.00[AMR][1000 genomes]
rs73323141	1.00[AMR][1000 genomes]
rs7812415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1021757	chr8:121501179-121620441	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv539740	chr8:121501179-121620441	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121557800-121597400	Weak transcription	Osteobl	bone
2	chr8:121560600-121597000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:121561000-121591600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:121561200-121596400	Weak transcription	Pancreas	Pancrea
5	chr8:121572400-121592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:121575200-121592800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:121575600-121597000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:121580400-121593000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr8:121581000-121592400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:121581000-121592400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:121581400-121593600	Strong transcription	HepG2	liver
12	chr8:121582800-121593200	Strong transcription	Liver	Liver
13	chr8:121583200-121597400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:121583200-121598200	Weak transcription	Spleen	Spleen
15	chr8:121585000-121601600	Weak transcription	Fetal Lung	lung
16	chr8:121586800-121597000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:121587000-121592400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:121587200-121596800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:121587200-121597000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:121587200-121597600	Weak transcription	Fetal Intestine Large	intestine
21	chr8:121587200-121623000	Weak transcription	Fetal Intestine Small	intestine
22	chr8:121587400-121596800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:121587400-121596800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:121587400-121597000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:121587400-121597000	Weak transcription	HSMMtube	muscle
26	chr8:121587400-121597200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:121587400-121597200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr8:121587400-121597600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:121587400-121600400	Weak transcription	Fetal Kidney	kidney
30	chr8:121587600-121591200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:121587600-121591600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:121587600-121594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr8:121587600-121596800	Weak transcription	NHLF	lung
34	chr8:121587600-121597000	Weak transcription	Gastric	stomach
35	chr8:121587600-121597000	Weak transcription	Lung	lung
36	chr8:121587600-121600000	Weak transcription	Aorta	Aorta
37	chr8:121587800-121596800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:121587800-121596800	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:121587800-121597000	Weak transcription	Adipose Nuclei	Adipose
40	chr8:121587800-121609200	Weak transcription	Fetal Stomach	stomach
41	chr8:121587800-121611000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr8:121587800-121640600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr8:121588200-121591400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:121588200-121596800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr8:121588200-121642400	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr8:121588400-121596800	Weak transcription	NHDF-Ad	bronchial
47	chr8:121588400-121610000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:121588600-121597000	Weak transcription	HSMM	muscle
49	chr8:121588600-121636600	Weak transcription	Primary B cells from cord blood	blood
50	chr8:121588800-121592200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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