Variant report
| Variant | rs73322588 |
|---|---|
| Chromosome Location | chr17:59619023-59619024 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:59618465..59619967-chr20:49348076..49350865,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124171 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16945213 | 1.00[EUR][1000 genomes] |
| rs57045595 | 1.00[EUR][1000 genomes] |
| rs58582622 | 1.00[EUR][1000 genomes] |
| rs59569849 | 1.00[AMR][1000 genomes] |
| rs60429538 | 1.00[AMR][1000 genomes] |
| rs60549606 | 1.00[EUR][1000 genomes] |
| rs6504040 | 1.00[EUR][1000 genomes] |
| rs6504041 | 1.00[EUR][1000 genomes] |
| rs7211905 | 1.00[EUR][1000 genomes] |
| rs7214625 | 1.00[EUR][1000 genomes] |
| rs7219765 | 1.00[EUR][1000 genomes] |
| rs7342839 | 1.00[AMR][1000 genomes] |
| rs7342949 | 1.00[AMR][1000 genomes] |
| rs7342968 | 1.00[AMR][1000 genomes] |
| rs73991905 | 1.00[EUR][1000 genomes] |
| rs73991907 | 1.00[EUR][1000 genomes] |
| rs73991919 | 1.00[EUR][1000 genomes] |
| rs9891905 | 1.00[EUR][1000 genomes] |
| rs9911414 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv457864 | chr17:59612041-59646764 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv575840 | chr17:59612041-59646764 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
