Variant report

Variant	rs73991919
Chromosome Location	chr17:59498336-59498337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59496790..59499054-chr20:49345945..49348014,2	MCF-7	breast:
2	chr17:59496898..59499415-chr20:52415404..52417279,2	MCF-7	breast:
3	chr17:59497346..59499681-chr17:59911621..59914856,3	MCF-7	breast:
4	chr17:59496517..59498736-chr17:59916457..59918359,2	MCF-7	breast:
5	chr17:59496140..59498788-chr17:60003815..60006322,2	MCF-7	breast:
6	chr17:59447417..59500105-chr20:49391742..49424382,639	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction
ENSG00000124243	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16945213	1.00[EUR][1000 genomes]
rs4459608	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57045595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58036240	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58582622	1.00[EUR][1000 genomes]
rs58832799	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59382073	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59430864	0.85[ASN][1000 genomes]
rs60549606	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61764069	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6504040	1.00[EUR][1000 genomes]
rs6504041	1.00[EUR][1000 genomes]
rs7211905	1.00[EUR][1000 genomes]
rs7214625	1.00[EUR][1000 genomes]
rs7219765	1.00[EUR][1000 genomes]
rs730562	0.90[AMR][1000 genomes]
rs73322588	1.00[EUR][1000 genomes]
rs734375	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73991905	1.00[EUR][1000 genomes]
rs73991907	1.00[EUR][1000 genomes]
rs73991913	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs758600	0.85[ASN][1000 genomes]
rs9891905	1.00[EUR][1000 genomes]
rs9911414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065939	chr17:59283350-59517730	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	331 gene(s)	inside rSNPs	diseases
2	nsv833505	chr17:59323466-59518007	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	326 gene(s)	inside rSNPs	diseases
3	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv908663	chr17:59464069-59521310	Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	278 gene(s)	inside rSNPs	diseases
5	nsv519931	chr17:59491281-59514461	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
6	nsv523855	chr17:59496238-59516834	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59491000-59504200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:59494600-59503000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:59495600-59503400	Weak transcription	NHLF	lung
4	chr17:59497200-59498600	Enhancers	Fetal Lung	lung
5	chr17:59497600-59503000	Weak transcription	HepG2	liver

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