Variant report

Variant	rs73325782
Chromosome Location	chr14:79758761-79758762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17109201	1.00[AMR][1000 genomes]
rs57583777	1.00[AMR][1000 genomes]
rs60000826	1.00[AMR][1000 genomes]
rs73325787	1.00[AMR][1000 genomes]
rs73325788	1.00[AMR][1000 genomes]
rs73325790	1.00[AMR][1000 genomes]
rs73325792	1.00[AMR][1000 genomes]
rs73325794	1.00[AMR][1000 genomes]
rs73327707	1.00[AMR][1000 genomes]
rs73327796	1.00[AMR][1000 genomes]
rs73330015	1.00[AMR][1000 genomes]
rs73339463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79747800-79759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:79750200-79760400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:79751400-79759600	Weak transcription	Brain Germinal Matrix	brain
4	chr14:79754400-79759600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:79754800-79759400	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:79756200-79768600	Weak transcription	Aorta	Aorta
7	chr14:79756600-79759600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:79756600-79760000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:79756800-79759600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:79756800-79759800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:79757000-79759800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:79757000-79759800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:79757000-79759800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:79758400-79759400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:79758600-79759600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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