Variant report

Variant	rs73327707
Chromosome Location	chr14:79843056-79843057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17109201	1.00[AMR][1000 genomes]
rs57583777	1.00[AMR][1000 genomes]
rs60000826	1.00[AMR][1000 genomes]
rs73325782	1.00[AMR][1000 genomes]
rs73325787	1.00[AMR][1000 genomes]
rs73325788	1.00[AMR][1000 genomes]
rs73325790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325792	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327708	0.93[AFR][1000 genomes]
rs73327796	1.00[AMR][1000 genomes]
rs73330015	1.00[AMR][1000 genomes]
rs73339463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3377779	chr14:79841649-79843597	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3371621	chr14:79842099-79843197	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79839400-79844600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:79839400-79846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:79840200-79846000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:79841000-79844200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:79842000-79844200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:79842000-79844200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:79842000-79844400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:79842200-79845600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:79842600-79844200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:79842600-79844200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:79842600-79846200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:79842800-79843600	Enhancers	Colon Smooth Muscle	Colon
13	chr14:79843000-79843400	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:79843000-79844600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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