Variant report

Variant	rs73326044
Chromosome Location	chr14:80038277-80038278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73339494	1.00[AMR][1000 genomes]
rs73339495	1.00[AMR][1000 genomes]
rs73339499	1.00[AMR][1000 genomes]
rs73339502	1.00[AMR][1000 genomes]
rs73341406	1.00[AMR][1000 genomes]
rs73341410	1.00[AMR][1000 genomes]
rs73341413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518333	chr14:80035594-80041626	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80035400-80041200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:80035600-80041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:80035600-80041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:80035600-80041200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:80035600-80041200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:80035600-80041200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:80035800-80040000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:80037000-80044600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:80037200-80038400	Enhancers	Fetal Heart	heart
11	chr14:80037200-80038600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:80038000-80042000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:80038000-80042200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:80038000-80042400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:80038000-80043400	Weak transcription	Aorta	Aorta
16	chr14:80038200-80039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:80038200-80041600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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