Variant report
| Variant | rs73341410 |
|---|---|
| Chromosome Location | chr14:79962335-79962336 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11159410 | 1.00[EUR][1000 genomes] |
| rs2018919 | 0.91[ASN][1000 genomes] |
| rs56187621 | 1.00[EUR][1000 genomes] |
| rs56376412 | 1.00[EUR][1000 genomes] |
| rs57309646 | 1.00[EUR][1000 genomes] |
| rs57886744 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs59206596 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60526371 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60575894 | 1.00[EUR][1000 genomes] |
| rs73324284 | 1.00[EUR][1000 genomes] |
| rs73326019 | 1.00[EUR][1000 genomes] |
| rs73326044 | 1.00[AMR][1000 genomes] |
| rs73339494 | 1.00[AMR][1000 genomes] |
| rs73339495 | 1.00[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73339499 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73339502 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73341406 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73341413 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73341444 | 0.95[ASN][1000 genomes] |
| rs73341451 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73341454 | 1.00[EUR][1000 genomes] |
| rs74068623 | 1.00[EUR][1000 genomes] |
| rs74068628 | 1.00[EUR][1000 genomes] |
| rs74068667 | 1.00[EUR][1000 genomes] |
| rs74068669 | 1.00[EUR][1000 genomes] |
| rs74068675 | 1.00[EUR][1000 genomes] |
| rs74068676 | 1.00[EUR][1000 genomes] |
| rs74068677 | 1.00[EUR][1000 genomes] |
| rs74068679 | 1.00[EUR][1000 genomes] |
| rs74068693 | 1.00[EUR][1000 genomes] |
| rs8014580 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv902112 | chr14:79939393-80050771 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79961800-79962800 | Weak transcription | Brain Germinal Matrix | brain |
| 2 | chr14:79962200-79963800 | Enhancers | HSMM | muscle |
