Variant report

Variant	rs73339495
Chromosome Location	chr14:79950366-79950367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2018919	0.84[ASN][1000 genomes]
rs57886744	0.84[ASN][1000 genomes]
rs59206596	0.81[ASN][1000 genomes]
rs60526371	0.84[ASN][1000 genomes]
rs73326044	1.00[AMR][1000 genomes]
rs73339494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73339499	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73339502	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73341406	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73341410	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73341413	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73341444	0.81[ASN][1000 genomes]
rs73341451	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79949000-79950400	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr14:79949000-79950600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:79949000-79950600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:79949000-79950600	Enhancers	Brain Angular Gyrus	brain
5	chr14:79949200-79950600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79949200-79950800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:79949200-79951000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:79949200-79951000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:79949200-79951000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:79949200-79951200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr14:79949600-79950400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:79949600-79950600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:79949600-79950600	Enhancers	Brain Substantia Nigra	brain
14	chr14:79949600-79951200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr14:79949800-79950600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:79949800-79950600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:79949800-79950600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:79949800-79950600	Enhancers	NH-A	brain
19	chr14:79949800-79951000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr14:79950000-79950400	Enhancers	Brain Cingulate Gyrus	brain
21	chr14:79950000-79950400	Enhancers	HSMM	muscle
22	chr14:79950000-79950400	Enhancers	HSMMtube	muscle
23	chr14:79950000-79950600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:79950000-79950600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:79950000-79950600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:79950000-79950600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:79950000-79950600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:79950000-79950800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr14:79950000-79950800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:79950000-79950800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr14:79950000-79951000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr14:79950000-79951000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr14:79950000-79951000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:79950000-79952000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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