Variant report

Variant	rs73341366
Chromosome Location	chr20:25639540-25639541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25638905..25641793-chr20:25662491..25665078,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs28417591	1.00[AFR][1000 genomes]
rs57150489	1.00[AMR][1000 genomes]
rs57870458	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57982209	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61146844	1.00[AMR][1000 genomes]
rs61598299	1.00[AMR][1000 genomes]
rs6515689	1.00[AMR][1000 genomes]
rs7267586	1.00[AMR][1000 genomes]
rs7273366	1.00[AMR][1000 genomes]
rs73334116	1.00[AMR][1000 genomes]
rs73339340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339381	1.00[AMR][1000 genomes]
rs73341321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341383	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343250	1.00[AMR][1000 genomes]
rs73343264	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73343265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73345256	1.00[AMR][1000 genomes]
rs73348906	1.00[AMR][1000 genomes]
rs73348986	1.00[AMR][1000 genomes]
rs8118159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8125218	1.00[AMR][1000 genomes]
rs9917415	1.00[AMR][1000 genomes]
rs9917456	1.00[AMR][1000 genomes]
rs9917460	1.00[AMR][1000 genomes]
rs9941767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25605600-25654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:25609200-25653400	Weak transcription	Brain Substantia Nigra	brain
3	chr20:25611400-25653200	Weak transcription	Fetal Intestine Small	intestine
4	chr20:25616000-25653600	Weak transcription	Adipose Nuclei	Adipose
5	chr20:25617000-25650400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:25617400-25640400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:25617600-25653400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr20:25618400-25653600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr20:25618400-25653600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:25623200-25653600	Weak transcription	Pancreas	Pancrea
11	chr20:25625000-25655200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr20:25625200-25641600	Weak transcription	Dnd41	blood
13	chr20:25626400-25653600	Weak transcription	Fetal Muscle Leg	muscle
14	chr20:25626800-25654000	Weak transcription	Gastric	stomach
15	chr20:25627400-25640600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:25628200-25653600	Weak transcription	Esophagus	oesophagus
17	chr20:25628800-25640600	Weak transcription	Fetal Thymus	thymus
18	chr20:25628800-25653400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr20:25628800-25653400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr20:25628800-25653400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr20:25629000-25649000	Weak transcription	Thymus	Thymus
22	chr20:25629000-25649200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr20:25629000-25652200	Weak transcription	Liver	Liver
24	chr20:25629000-25653400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr20:25629000-25653600	Weak transcription	Brain Hippocampus Middle	brain
26	chr20:25629000-25653600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr20:25629000-25653800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr20:25629200-25650800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr20:25629400-25650400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr20:25629400-25650400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr20:25632600-25653600	Weak transcription	Brain Anterior Caudate	brain
32	chr20:25639200-25642400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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