Variant report

Variant	rs61598299
Chromosome Location	chr20:25690763-25690764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs57150489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57870458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57982209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59631229	1.00[EUR][1000 genomes]
rs6037213	1.00[EUR][1000 genomes]
rs6050738	1.00[EUR][1000 genomes]
rs61146844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6115245	1.00[EUR][1000 genomes]
rs6515689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7267586	1.00[AMR][1000 genomes]
rs7273366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73334116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73339340	1.00[AMR][1000 genomes]
rs73339342	1.00[AMR][1000 genomes]
rs73339354	1.00[AMR][1000 genomes]
rs73339363	1.00[AMR][1000 genomes]
rs73339381	1.00[AMR][1000 genomes]
rs73341321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73341330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73341334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73341366	1.00[AMR][1000 genomes]
rs73341383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73343243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73343250	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73343258	1.00[EUR][1000 genomes]
rs73343264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73343265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73345241	1.00[EUR][1000 genomes]
rs73345246	1.00[EUR][1000 genomes]
rs73345256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73348906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73348986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8118159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8125097	1.00[EUR][1000 genomes]
rs8125218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917456	1.00[AMR][1000 genomes]
rs9917460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9941767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv525033	chr20:25688001-25730968	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25687800-25695800	Weak transcription	Gastric	stomach
3	chr20:25690400-25692600	Weak transcription	Primary T cells from cord blood	blood

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